Nomascus leucogenys (northern white-cheeked gibbon): 100587822
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Entry
100587822 CDS
T03265
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain isoform X10
KO
K24357
collagen type XX alpha
Organism
nle
Nomascus leucogenys (northern white-cheeked gibbon)
Pathway
nle04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
nle00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100587822 (COL20A1)
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
VWA_2
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
DUF4959
Motif
Other DBs
NCBI-GeneID:
100587822
NCBI-ProteinID:
XP_003280198
Ensembl:
ENSNLEG00000010011
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Position
13:complement(926712..964374)
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AA seq
1277 aa
AA seq
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MSSGAPAHLGLCLWLWLGATLGRQQGQASGLLRLSVLPEDRLQMKWRESEGSGLGYLVQV
KPMAGDSEQEVILTTKTPKATVGGLSPSKGYTLQIFELTGSGRLLLARREFVIEDLKSSS
LDRSSQRPLGSGAPEPTPSHVGSPDPEQASEPRVASAPSQDPPTPAGPHFRCLPPVPADM
VFLVDGSWSIGHSHFQQVKEFLASVIAPFEIGPDKVQVGLTQYSGDAQTEWDLNSLGTKE
QVLAAVRRLRYKGGNTFTGLALTHVLGQNLQPAAGLRPEAAKVVILVTDGKSQDDVHTAA
RVLKDLGVNVFAVGVKNADEAELRLLASPPRDITVHNVLDFLQLGALAGLLSRLICQMLQ
GGSPRQGPAVAPALDTLPAPTSLVLSQVTSSSIRLSWTPAPQLPLKYLIVWRASRGGTPR
EVVVEGPAASMELHSLASRTEYLVSVFPVYEGGVGEGLRGLVTTAPLPPPRALTLAAVTP
RTVHLTWQPSAGATRYLVRCSPASPKGEEEEREVQVGRPEVLLDGLEPGRDYEVSVQSLR
GPEGSEARGIRARTPALAPLRHLGFSDVSHNTARVFWEGAPRPVRLVRVTYASSEGGHSG
QTEAPGNATSATLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSQLSVTELPG
DAVQLAWVAAAPSGVLVYQIKWTPLGEGKAREISVPGNLGTAILPGLGRHTEYDVTILAY
YRDGARSDPVSLRYTPSTVSRSPPSNLALASETPDSLQVSWTPPLGRVLHYWLTYAPASG
LGPEKSVSVPGPRSHVTLPDLQAATKYRVLVSAVYAAGRSEAVSATGQTACPALRPNGSL
PGFDLMMAFGLVEKAYASIRGVAMEPSAFGGTPTFTLFKDAQLTRRVSDVHPAPLPPEHT
IVFLVRLLPETPREAFALWQMTAEDFQPLLGVLLDAGRKSLTYFHRDPRAALQEATFDPQ
EVRKIFFGSFHKVHVAVGRSKVRLYVDCRKVAERPLGEVGSPPAAGFVTLGRLAKARGPR
SSSATFQLQTLQIVCSDTWADEDRCCELPASKDGETCPAFVSACSCSSETPGPPGPQGPP
GLPGRNGTPGEQGFPGPRGPPGVKGEKGDHGLPGLQGHPGHQGIPGRVGLQGPKGMRGLE
GTAGLPGPPGPRGFQGMAGARGTSGERGPPGAVGPTGLPGPKGERGEKGEPQSLATLYQL
VSQASHVSKFDSFYENTRPPMPILEQKLEPGTEPLGSPGTHSEALLPGEWGRGGRHLESR
GAPGAVGQTASPGQQGG
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atgagctccggagcccctgcacacctcggcctctgcctctggctgtggctgggcgccacc
ctgggaagacagcaaggacaagcaagtggcctcctgaggctgtctgtgctgcctgaggac
cggctgcagatgaagtggagagagtcggaggggagcggcctcggctacctggtgcaggtg
aagcccatggcaggggactcggaacaggaggtgatactgaccaccaagacccctaaagcc
acagtgggaggcctgagcccctccaagggctacaccttgcagatcttcgagctcactggc
tctgggcgcctcctgctggctcggagggagtttgtgattgaggatctgaagagtagctcc
ctggacagaagcagccagaggcccctcggctctggagccccggagcccaccccctcccac
gtggggagcccagaccctgagcaggcttctgagccccgagttgcctccgcgccaagccag
gatccgcccactcctgccggcccccacttccgctgcctgccccccgtgcctgctgacatg
gtcttcctggtggacgggtcctggagcattggccacagtcacttccagcaggtcaaggag
ttcctggccagcgtcatcgcaccctttgaaatcgggccagataaagtccaagtaggcctg
actcagtacagcggggatgcccagactgagtgggacctgaactccctcggcaccaaggag
caggtgctggcagctgtgcgccgcctccgatacaaggggggaaacacgttcacaggcctt
gccctgacccacgtgctggggcagaacctgcagccggcggctggcctccgtccagaggcg
gccaaggtggtgattctggtgacagacggcaagtcccaggacgatgtgcacactgctgcc
cgtgtcctcaaggacctgggcgtgaacgtctttgctgtgggtgtgaagaatgccgatgag
gctgagctgaggctcctggcatccccaccgcgggacatcactgtccacaatgtgctggac
ttcctgcagcttggagcgctggctgggctgctcagccgcctcatctgccagatgctccag
ggtgggagcccgcggcagggcccagcagtggctccagccctggacaccctccccgcccct
accagcctggtcctgagccaggtgacctcctccagcatccgcctgtcgtggactccagcc
ccccagctccccctcaagtatctgatcgtttggcgagcctccagaggtggcacccccagg
gaggtggtggtggaggggcccgccgcctccatggagctgcacagcctggcctcccgcaca
gagtacttggtttccgtgttccccgtctatgagggcggtgttggcgaaggccttcggggc
ctggtgaccacagcacctctgcccccgccccgggcgctgaccctggccgcagtgacgccc
agaaccgtccacctcacctggcagccctcggccggggccacccgctacctggtgcgatgt
tctcctgcttcccccaagggtgaggaggaggagcgagaggtgcaggtcgggcggcccgag
gtgctgctggatggcctggaaccgggcagggactatgaggtctccgtgcagagcctgcga
ggccctgagggcagtgaggcccggggcatccgtgccaggacccccgccctggcccccctg
agacacctgggcttctcagacgtgagccacaacacggcacgagtgttctgggagggcgct
ccgaggcctgtgcgcctggtcagggtcacctatgcctccagcgagggcggacactcaggg
cagacagaggctcctgggaacgccacctcggccacgctggggcctctctcttcctccacc
acctacactgtccgcgtcacctgcctctaccctgggggaggttcctctacgctgactggc
cgggtgaccaccaagaaagctcccagcccaagccagctgtctgtgacggagctgccaggg
gacgcggtccagctggcgtgggtggccgcagccccgtctggcgtgcttgtctaccagatc
aagtggacgcccctgggagaggggaaggctcgtgagatctctgtcccagggaacctcggc
acggccatcctgcctggcctagggaggcacacggagtacgacgtcaccatcctggcctac
tacagggatggggcccgcagtgaccctgtgtccctccgctataccccctccacagtgagc
aggagccccccctccaacctggccctggcctcggagacccccgacagcctgcaggtcagc
tggacacccccgcttggccgcgtgctccattactggctcacctacgcgcccgcctctggc
ttgggacccgagaaatccgtctctgtgccaggacccaggagccacgtgacactccccgac
ctgcaggcagccaccaagtacagggtcctggtctcagctgtctatgcagcaggcaggagt
gaggctgtgtctgccacgggccagacagcctgcccagccctccgccccaacggctccctc
ccagggtttgacctgatgatggcctttggcctggtggaaaaggcttatgcttccatccgg
ggcgtggccatggagccctctgccttcggtgggaccccgacctttacgctcttcaaggat
gcgcagctgacaagacgggtcagtgacgtccacccagcccccctccctccagagcacacc
atcgtcttccttgtgcgcctgcttcccgagacaccccgtgaggccttcgcgctgtggcag
atgacggccgaggacttccagcccctcctcggggttctgctggatgccgggaggaagtcc
ctgacctacttccaccgcgaccccagggctgccttgcaggaggccaccttcgacccacag
gaagtgaggaagattttcttcgggagcttccacaaggtgcacgtggctgtgggccgctcc
aaggtcaggctctatgtggactgccggaaggtggctgagcggcccctcggggaggtgggc
agcccacccgctgccggcttcgtcacactggggaggctggccaaggccaggggcccccgg
agcagctcggccacgtttcagctccagacgctgcagatcgtgtgcagtgatacctgggcc
gatgaggaccggtgctgtgagctccctgcctcgaaggatggagagacctgcccagccttc
gtgtctgcctgttcctgttcctcagagacccctgggcccccagggccccaaggaccccca
ggcctccctgggaggaatggcaccccaggagagcagggctttccagggcccaggggtcca
ccaggggtcaaaggagagaaaggagaccatgggctcccaggcttgcagggccaccccggc
caccagggcatccccgggagagttggcctccagggaccaaagggaatgagaggcctggag
ggaactgctggcctgcctggaccccctggccccagggggttccagggcatggcaggggcc
aggggcactagtggagagcgaggacctccaggggccgtggggcccacagggctgccgggg
cccaaaggggaacgaggagagaagggcgagccgcagtcccttgccaccctctaccagctc
gtgagccaggcctcacacgtgtcaaagttcgactccttctacgagaacaccaggcccccc
atgcccatcttggagcagaagctggagccgggcactgagcccctggggtcccctggcacc
cacagcgaggccctgcttcccggagaatgggggcgtggtggccgccaccttgagagcaga
ggggcgcctggagctgttggtcagacggccagccctgggcagcaggggggctag
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