Nomascus leucogenys (northern white-cheeked gibbon): 100593417
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Entry
100593417 CDS
T03265
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X2
KO
K10897
partner and localizer of BRCA2
Organism
nle
Nomascus leucogenys (northern white-cheeked gibbon)
Pathway
nle03440
Homologous recombination
nle03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
100593417 (PALB2)
03460 Fanconi anemia pathway
100593417 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nle03400
]
100593417 (PALB2)
DNA repair and recombination proteins [BR:
nle03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
100593417 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
100593417 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR19_1st
Microp_apicomplexa_20
Motif
Other DBs
NCBI-GeneID:
100593417
NCBI-ProteinID:
XP_003261721
Ensembl:
ENSNLEG00000012023
UniProt:
G1RN19
LinkDB
All DBs
Position
2:81587441..81623053
Genome browser
AA seq
1186 aa
AA seq
DB search
MEEPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKIKHSIKKTVEEQDCLSQ
QELSPQLNHSEPKNKICVYDKLHIKTHLDEETGEKTSITLDVGPESFNLGDGPGGLPIQG
TDDTQEHFPHRVSDPDGEQKQKLPSRRKKQQKRTFISQERDCVFGTDSLRLSGKRLKEQE
EISSKNPTRSPVTEIRTHLLSLKSELPDSPEPVTEINEDSVLIPPTAQPEKGVDTFLRRP
NFTRATTVPLQTLSDSGSSQHLEHIPLKGSSELTTHGLKNIRFTSPVSLEAQGKKMTVST
DNRLVSKAISKSGQLPTSSNLEANISCSLNELTHNNLPANENQNLKEQNQTEKSLKSPSD
ALEGRNENLQENEILSQPKSLSLEATSPLSAEKHSCTMLEGLLFPAEYYVRTTRSMSNCQ
RKVALEAVIHSHLDVKKKGFKNKNKDASKNLNLSNEETDQSEIRMSGTCTGQPSSRTSQK
LLSLTKVSSPAGPTEDNDLSRKAVAQVPGRRYRGKRKSACTPASDHCEPLLPTSSPSVVN
RSKEEVTLHKYQHEKLLIRVKGKKSRHQKEDSLSWSNSAYLSLDDDAFTAPFHKDGMLSL
KQLLSFLSITDFQLPDEDFGPLKLEKLKSCSEKPVEPFESKMFGEGHLKEGTCIFPEELS
PKRMDTEMEDLEEDLIVLPGKSHPKRPNPQSHSTKTGLSSSILLYTPLNTVAPEDNDRPT
ADVCSPAFPILGTTPAFGPQGSYEKASTEVTGRTCCTPQLAHLKDSVCLASDSKQFDSSS
SPAKPHTTLQVSGRQGQPTCDCDSVPPGTPPPIESFTFKENQLCRNTCQELHKHSVEQTE
TAELPASDSINRGNLQLVSKLKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKA
LDAWQWEKLYTWHFTEVPVLQIVPVPDVYNLVCVALGNLEIREIRALLCSSDDESEKQVL
LKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ
GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK
ESELLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIW
DLLLGQCTALLPPISDQHWSFVKWSGTDCHLLAGQKDGNIFVYHYS
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcctcccgggaagcccctcagctgtgaggagaaggaaaagttaaaggagaaa
ttagcattcttgaaaagggaatacagcaagacactagcccgccttcagcgtgcccaaaga
gctgaaaagattaagcattctattaagaaaacagtagaagaacaagattgtttgtcccag
caggagctctcaccgcagctaaaccactcagaacctaaaaataaaatatgtgtttatgac
aagttacacatcaaaacccatcttgatgaagaaactggagaaaagacatctatcacactt
gatgttgggcctgagtcctttaaccttggagatggcccaggaggattacctatacaagga
acagatgacacccaagaacattttccccacagggtcagtgaccctgatggtgagcaaaag
cagaagctgccaagcagaagaaagaagcagcagaagagaacatttatttcacaggagaga
gactgtgtctttggcactgattcactcagattgtctgggaaaagactaaaggaacaggaa
gaaatcagtagcaaaaatcctactagatcaccagtaactgaaataagaactcacctttta
agtcttaagtctgaacttccagattctccagaaccagttacagaaattaatgaagacagt
gtattaattccaccaactgctcaaccagaaaaaggtgttgatacattcctaagaagacct
aatttcaccagggctactacagttcctttacagactctatcagatagcggtagtagtcag
caccttgaacacattcctcttaaaggtagcagtgaacttactactcacggcctaaaaaac
attagatttacttcacctgtaagtttggaggcacaaggcaaaaaaatgactgtctctaca
gataaccgccttgtaagtaaagctataagtaaaagtggccaactgcccacaagttctaat
ttagaggcaaatatttcatgttctctaaatgaactcactcacaataacttaccagcaaat
gaaaaccaaaacttaaaagaacaaaatcaaacagagaaatctttaaaatctcccagtgac
gctcttgaaggcagaaatgaaaatcttcaggaaaatgagattctaagtcaacctaagagt
cttagcctggaagcaacctctcctctttctgcagaaaaacattcttgcacaatgcttgaa
ggccttctgtttcctgcagaatattatgttagaaccacacgaagcatgtccaattgccag
aggaaagtagccctggaggctgtcattcacagtcatttggatgtcaagaaaaaagggttt
aaaaataaaaataaggatgcaagtaaaaatttaaacctttccaatgaggaaactgaccaa
agtgaaattaggatgtctggcacatgcacaggacaaccaagttcgagaacttctcagaaa
cttctctcattaactaaagtcagctctcccgctgggcccactgaagataatgacttgtct
aggaaggcagttgcccaggtacctggtagaagatacagaggaaaaagaaaatcagcctgc
accccagcatcagatcattgtgaaccacttttgccaacttccagcccatcggttgttaac
aggtccaaggaggaagtcaccttgcacaaatatcagcacgaaaaattacttattcgagtg
aaggggaagaaaagtcgtcatcaaaaagaggattccctttcttggagtaatagtgcttat
ttatccttggatgatgatgctttcacggctccatttcataaggatggtatgctgagttta
aagcaactactgtcttttctcagtatcacagactttcagttacctgatgaagactttgga
cctcttaagcttgaaaaactgaagtcctgctcagaaaaaccagtggagccctttgaatca
aaaatgtttggagagggacatcttaaagagggaacctgtatttttccagaggaactgagt
cctaaacgcatggatacagaaatggaggacttagaagaggaccttattgttctaccagga
aaatcacatcccaaaaggccaaacccgcaaagccacagtacaaagacaggcctttcttca
tccatattactttatactcctttaaatacggttgcgcctgaggataatgacaggcctacc
gcagacgtgtgttcacctgctttccccatcttaggtactactccagcctttggccctcaa
ggctcctatgaaaaagcatctacagaggtcactggacgaacttgctgcacaccccagctt
gctcatttgaaagactcagtctgtcttgccagtgatagtaaacaattcgacagttcaagc
agcccagcaaaaccacataccaccctgcaagtgtcaggcaggcaaggacaacctacctgt
gattgtgactctgtcccgccaggaacacctccacccattgagtcattcacttttaaagaa
aatcagctctgtagaaacacatgccaggagctgcataaacattccgtcgaacagactgaa
acagcagagcttcctgcttctgatagcataaaccgaggcaacctacaattggtttcaaag
ttaaagaatccttcaggttcctgttccgtagatgtgagtgccatgttttgggagagagcc
ggttgtaaagagccatgtatcataactgcttgtgaagatgtagtttctctttggaaagct
ctggatgcttggcagtgggaaaaactttatacctggcacttcacagaggttccagtatta
cagatagttccagtccctgatgtgtataatctcgtgtgtgtagctttgggaaatttggaa
atcagagagatcagggcattgctttgttcctctgatgatgaaagtgaaaagcaagtacta
ctgaagtctggaaatataaaagctgtgcttggcctgacaaagaggaggctagtgagtagc
agtgggaccctttctgatcaacaagtagaagtcatgacgtttgcagaagatggaggaggc
aaagaaaaccagtttttgatgcctcctgaggagactatactaacttttgctgaggtccaa
gggatgcaagaagctctgcttggtactactattatgaacaacattgttatttggaattta
aaaactggtcaactcctgaaaaagatgcacattgatgattcttaccaagcttcagtctgt
cacaaagcctattctgaaatggggcttctctttattgtcctgagtcatccctgtgccaaa
gagagtgagttgttgcgaagccctgtgtttcagctgattgtgattaaccctaagacgact
ctcagcgtgggtgtgatgctgtactgtcttcctccagggcaggctggcaggttcctggaa
ggtgacgtgaaagatcactgtgcagcagcaatcttgacttctggaacaattgccatttgg
gacttacttctcggtcagtgtactgcgctcctcccacctatctctgaccaacattggtct
tttgtgaaatggtcaggtacagactgtcatttgctagctggacaaaaagatggaaatata
tttgtataccactattcataa
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