Candidatus Nitronauta litoralis: G3M70_01375
Help
Entry
G3M70_01375 CDS
T07016
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
nli
Candidatus Nitronauta litoralis
Brite
KEGG Orthology (KO) [BR:
nli00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nli03009
]
G3M70_01375 (rlmD)
Enzymes [BR:
nli01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
G3M70_01375 (rlmD)
Ribosome biogenesis [BR:
nli03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
G3M70_01375 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
MTS
Methyltransf_11
Methyltransf_15
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
QPJ60607
UniProt:
A0A7T0BUC6
LinkDB
All DBs
Position
310313..311683
Genome browser
AA seq
456 aa
AA seq
DB search
MPKPTSNIPVTVGDQLEVEVETLNSSGDGIARVDGFTVFVPQGLPGDQCKIEITKTANRY
SVARVIERTAPGPHRIDSPCPVFPECGGCRLQDLNYEQQLYFKAGVVKDNLKHIGKIDWP
EPIKAIPAIPVYGYRNKGSFALEGRGKNLGIGFFKTGTHEVVDSATCDTLMEPVNAVKEW
LRSLISYHHVSIYDETKHMGFLRNLVIRHSPTTGQSLVGLVTTRGIFKKRFLPDLTKESD
LKRLGIVGILQNFNAQKSNFILGSKSKPLWGREYLEDNLVGLKFKISLGSFFQVNPNESI
KLYKLIEEWTHLEKGLIVDAYCGNGGIALWLARAGRKVLGIDEFAPAIEDAKTSAGWNKL
NEVQFEAGTLESHLEGLKEKNIGTLIVDPPRKGLSTHVVETIPKLNPPRLIYVSCNPATL
ARDLALLTDYSIKDIRVIDMFPQTPHIETAVLLEKV
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacccacgtcaaatattccggtcaccgtcggcgaccagcttgaagtcgaagtc
gagacactcaactcgtcaggcgatggtattgcccgcgtcgatggattcaccgtgttcgtt
ccacagggcctgccgggtgaccagtgtaagatcgaaataaccaaaaccgccaaccgctac
agcgtggcgcgggttattgaaagaaccgctccgggaccacatcgcatcgactctccctgc
cctgtttttcccgagtgtggcggttgccgtctgcaggatctaaactacgaacagcaacta
tacttcaaagccggagtcgtaaaagacaatcttaagcacattggaaagatcgattggcct
gagccgatcaaagccatcccggctatcccggtttatggctatcgcaataaaggcagcttt
gcactggaaggacgaggcaaaaaccttggcataggttttttcaaaacaggcacgcatgaa
gtggtcgactccgctacatgcgacacgttgatggaaccggtcaatgccgtcaaggaatgg
ctgcgcagtctgatctcctaccatcacgtttcgatctacgacgaaacgaagcacatggga
tttttaaggaacctcgtcatccggcattcaccgacaaccgggcaatcactggtcgggctg
gtcacgacgcgcgggatattcaagaaacggtttttaccggatctgaccaaggagtcggat
ttgaaacggctgggtattgttggcattctgcaaaatttcaatgcacagaaaagcaatttc
atcctgggttcaaaaagtaaaccgctttggggacgcgaatacctcgaagacaacctggtc
ggtttgaagtttaaaatttcactcggctcgttcttccaggtgaatccgaacgaatcgatt
aaactttacaagctgatcgaagaatggacccatcttgaaaagggactgatcgtcgatgcc
tactgcggcaatggcggcatcgccctgtggctggcgcgcgccggccggaaagtgcttggc
attgacgagttcgcacctgccattgaggatgcaaaaacaagcgccggctggaacaagtta
aacgaagtccagtttgaagcgggaacactggaaagtcatttggaaggtttgaaggaaaag
aacatcggcacactcattgtcgatccaccgcgcaaagggttgtcgacccatgtggtcgag
accatcccgaaactgaatccgccaagactgatctacgtctcgtgcaaccccgccacactg
gcacgcgatctcgccctgctgactgattacagcatcaaggacatacgcgtcatcgacatg
ttcccccagacaccccatatagagacagcggtgttgctggagaaagtttaa
DBGET
integrated database retrieval system
