Candidatus Nitronauta litoralis: G3M70_02070
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Entry
G3M70_02070 CDS
T07016
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nli
Candidatus Nitronauta litoralis
Pathway
nli02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nli00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
G3M70_02070 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nli03021
]
G3M70_02070 (rpoD)
Transcription machinery [BR:
nli03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
G3M70_02070 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Vmethyltransf_C
DegS
DUF1699
Rotamase
Motif
Other DBs
NCBI-ProteinID:
QPJ60738
UniProt:
A0A7T0FZD0
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All DBs
Position
465123..466889
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AA seq
588 aa
AA seq
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MSNADKIADVSEINQLITIGKEKGYLTYEEVNDVLPSNLVAPDQIDDLMHLFGENEIDIV
DTAMKGEKAANTGDTETEEEAPAEEAAPEAKPDNVSIDDPVRMYLREMGTISLLTREGEV
EIAKRIEAGQNEVINAVANCSVTLHELLHLVEVLKKGEANVFHIVNAGDPEAKKEPSEKD
EIKRLTKNIKELVKVHEKLEKAAKKAATPKLSAKMKAKWDKEVADTAKKLDDTFFNMNLS
LNYMDLIIERIYEIAAQIREAGKPERLIEKELKMPLAEIKKLAKNWAKQKSVKLPQGKVV
TKKQYDEYYKVAQSTRRKVRKIERETNSTKDALLSTVRTIARGRVKDKTAKRELAEANLR
LVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIAD
QARTIRIPVHMIETINKLIRVSRHLVQELGREPTPEEIAVKMSLPVDKVRKVLKIAKEPI
SLETPIGEEENSHLGDFIEDKKVLSPIDAVVKKNLKDQTLRVLSTLAPREEKVLRKRFGI
GLDSEHTLEEVGQDFAVTRERIRQIEAKALRKLRHPSRSKKLKSFIEG
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacgctgacaaaatcgcggacgtatccgaaatcaatcagctcattaccattggt
aaggaaaagggttatctgacctatgaagaggtcaatgacgtgttaccttccaacctggtg
gccccggaccagatcgacgacctgatgcacctgtttggtgaaaacgaaatcgatatcgtc
gacacggcaatgaaaggggaaaaagctgcgaacaccggagatacggaaacagaagaagag
gctccggcagaagaagccgctccagaggcaaaaccggataatgtcagtatcgacgatccg
gtccgtatgtaccttcgggagatgggcaccatttccctgctcacacgtgaaggtgaagtc
gaaatcgccaaacgtatcgaagccgggcaaaacgaagtgataaacgctgtggccaattgc
tctgtaactctgcatgaactgctccatcttgttgaggtattgaaaaaaggagaggccaac
gtttttcatatagtgaatgccggagatcccgaagcgaaaaaagagccttctgaaaaagac
gaaatcaaacggttgaccaaaaacatcaaggaactggtcaaggttcacgaaaaactggaa
aaggctgccaaaaaggcagcgacaccaaagctttcagccaaaatgaaagcaaagtgggat
aaagaagtcgccgacacagcaaaaaaactggacgacaccttcttcaacatgaacctgagc
ctcaattacatggaccttattatcgaaaggatctatgaaatcgccgcccagattcgcgaa
gcaggaaaaccagaacggctgatcgaaaaagaattgaaaatgccgctagctgaaattaag
aaactggccaaaaactgggcaaaacaaaaaagtgtcaaacttccccagggcaaagtggtc
accaaaaagcaatacgacgaatattacaaggttgcgcaatccacacgccggaaagtccgg
aaaattgaacgtgaaaccaacagcaccaaagacgcacttttgtccaccgttcgcaccatt
gcgcgcggtcgggttaaagacaaaaccgccaagcgcgaacttgcggaagccaacctgcgt
ctggttgtttccatcgcaaaaaaatacaccaaccggggactgcagtttcttgacctgatt
caggaaggtaacatcggcctgatgaaagcagtcgacaaatttgaataccgtcgcggttac
aaattcagcacctatgccacctggtggattcgccaggccatcacccgcgccattgcggat
caggcgagaacgattcgtattccagtccatatgattgaaaccatcaacaagctgatcagg
gtttcacgtcatctggtgcaggaactgggacgtgaacctaccccggaagagatcgcggtg
aaaatgagcctgcctgtagacaaggtacgtaaagtgctcaagatcgcgaaagaaccgatc
tctcttgaaactccaattggtgaagaagagaacagtcatcttggggatttcattgaagac
aaaaaagttctgtcccccatcgacgccgtggtgaaaaagaatttgaaagatcagaccctg
cgcgtcctgtctaccctggcaccgcgggaggaaaaagtactgcgcaaacggtttggcatc
ggtctcgactccgaacatacattggaagaagtcggacaggattttgccgtcacccgtgaa
cgcatacggcagatcgaagcgaaagccttgcgcaaattgaggcacccaagccgtagcaaa
aaactgaaaagtttcatcgaaggataa
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