Candidatus Nitronauta litoralis: G3M70_12780
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Entry
G3M70_12780 CDS
T07016
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
nli
Candidatus Nitronauta litoralis
Pathway
nli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3M70_12780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nli03019
]
G3M70_12780
Enzymes [BR:
nli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G3M70_12780
Messenger RNA biogenesis [BR:
nli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G3M70_12780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QPJ62703
UniProt:
A0A7T0G189
LinkDB
All DBs
Position
complement(2807398..2808834)
Genome browser
AA seq
478 aa
AA seq
DB search
MVLRLYFIHPSAANSRLLFLPVNLEFHLESLKFESLPLPDLLMQGIQEAGFTECTPIQAQ
TLPLTLEGKDVAGQAQTGTGKTAAFLIAIFAHLLKKPRSEEKDRGWIAPRAMVIAPTREL
ARQIEIDATMLGKYCGLKVVCIFGGMDYEKQKRQIQGGIDLLIVTPGRLIDFYKQKLFSL
KSIEVLVIDEADRMFDMGFISDIRYILRNTTKFDQRLSMLYSATLNFRVMELCYEHMNDP
VPIKINPEKKVVDQVKQWLYHVGSHEKFRLLLGILKKEGGEKILIFTNTKWEAEKLELKL
NYNGYPSGVISGDLPQRKRISMLDKFTTGELPIMIATDVASRGLHIDGVTHVINYDLPQD
SEDYIHRIGRTARAGAKGDAISLACEDYALNLERIEEALEKQIPVEWPEEEMFIEEKEGT
PKAPPRKKFNGSRDDRNRRSGNSSSSGKPRGSQGRGRSRNSSSGKKKSSRPPHRTKSS
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggtgttaagattgtactttattcacccttccgcagcaaatagtcgtttactgttcctg
cctgttaatctggagttccacttggaatcattaaagttcgagtcacttcccctacccgac
ctgttgatgcagggaatccaggaagcggggtttaccgaatgcacccccattcaggcgcag
acccttcccctgacccttgagggaaaggatgttgcgggccaggcccaaactggtacaggg
aaaactgcagcatttctaatcgccatttttgcccaccttctgaaaaaaccacgatcagag
gaaaaggaccgaggctggattgcaccccgggcaatggtgattgcccccacacgcgagctg
gccaggcaaattgaaattgatgccacgatgctggggaaatattgtggactcaaggtggtc
tgtattttcggtggcatggattacgaaaaacaaaaacgccagattcagggcggtatcgac
ctgcttattgtcacaccgggaagactgatcgatttttacaaacaaaaactattcagcctt
aaatcgattgaagtgctggtcatagatgaagccgaccgcatgttcgacatgggattcatt
tccgatatccgctacatcctgagaaacaccactaaatttgaccaacgactgtcgatgctg
tattcggcaaccctcaatttccgagtcatggaattgtgttacgaacacatgaatgatccg
gttccgatcaaaatcaatcctgaaaagaaagtggtcgaccaggtcaagcaatggctgtac
cacgtgggtagccatgaaaagtttcgcctcctactgggcattttaaagaaggagggtgga
gaaaaaatcctgattttcaccaacaccaaatgggaagctgagaaacttgagcttaagctt
aattacaatggttatccctcaggtgtcatcagtggcgacctgccgcaacgcaaacgtatc
tctatgctggacaaattcaccactggcgagttgcccatcatgatcgcgactgatgtcgct
tcacgtggtctacatattgatggggtaactcatgttatcaactacgatctgcctcaggat
tcggaagattatattcacaggattggacgcaccgctcgggctggcgcaaagggagatgcc
atcagtctcgcatgtgaggactatgctctgaaccttgaacgaattgaagaggcgctggaa
aaacagataccggtggaatggccagaagaagaaatgttcattgaagaaaaagaaggcacc
ccaaaagccccaccacgcaaaaaattcaacggatcccgggatgaccgtaaccgtcggtcg
ggaaactcaagctcttcaggaaaaccccggggatcccagggcagaggccgttcccgcaat
tcttcctctggaaaaaaaaagtcgagcaggccaccacacagaaccaaaagctcataa
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