Nostoc linckia: NIES25_02420
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Entry
NIES25_02420 CDS
T10227
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
nlk Nostoc linckia
Brite
KEGG Orthology (KO) [BR:
nlk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nlk03032
]
NIES25_02420
03400 DNA repair and recombination proteins [BR:
nlk03400
]
NIES25_02420
Enzymes [BR:
nlk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NIES25_02420
DNA replication proteins [BR:
nlk03032
]
Prokaryotic type
DNA Topoisomerases
NIES25_02420
DNA repair and recombination proteins [BR:
nlk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NIES25_02420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Toprim_4
Mur_ligase_C
Motif
Other DBs
NCBI-ProteinID:
BAY73834
LinkDB
All DBs
Position
325643..327805
Genome browser
AA seq
720 aa
AA seq
DB search
MPKRLLVVESPGKVKKLSQILGSEWKVLASCGHIRELSDEGEDSLGFSMDGSRIKCNYIP
RDQRAKETIQRLKAAVKQVDEVVIATDPDREGETIAWHIKEVLGLKEPKRVIYTEITAPA
VREAIAKPRKLDLNLVGAGLCRDCLDKLVGYKGSPLVWALNNGAKSVGRVQSATLHLICQ
REKEIQTFVPQDYWSVWVDYAEGFRAFYKGTANSDADTPEQKAETNDDAATSTTQAPESK
RILSEAEANRLVAEARRHPHQVIKFEGKIVQRQPPPPFTTSTLQQAAGSKLRFSPDKTMQ
VAQKLYEAGLITYMRTDSVMLSPEFCASARQWLEQNDPQNVPQSLAKHRSAKLAQEAHEA
IRPTDVFRPSAELRVELPTDDFNLYVMIWKRAIASQCRAAQLRKTQIVTQSGNLLWLCNG
QVVEFYGYARYWNNISKDTVIPQLQQGQILTLKDAQHEKKQTQPPPRYSEPKLVQLMERK
GIGRPSTYAPTVATLKKRDYVQLTKDHLQPTALGLEVDAFLQKALPDLLEAEFTAKMEDA
LDAIAIGKQGWQQYLSTWNQEYFAPALAKAKTVAVSSASGNKASPGRERKYETSKTRCPE
CKNCLAKIPSSKVKKKYFLKCVSGCENIVLFWSDLSKTWESPRNKVSKDESIAKPPAKLT
SYSCPVCKKPLEEYSYIKEGQNKTMLRCSNPQSRQDKKHQQVAYFSTQKGWWSPKFGELN
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaacgcctcctcgtggtagagtctcccggaaaagtcaaaaaactcagtcaaatt
ctgggttcagaatggaaagttctagctagctgcggccatatccgcgaactcagcgacgaa
ggtgaagattcgttgggtttcagtatggatggcagtcggatcaaatgcaattatattccc
cgcgaccaacgagccaaggaaaccattcagcgactaaaagccgcagttaaacaggttgat
gaagttgtcatcgccaccgacccagaccgggagggagaaacaatcgcttggcatatcaag
gaagtgttgggattaaaagaaccaaaacgagtaatttatacagaaattacagcaccagca
gttcgagaagcgatcgccaaaccgagaaaactagatttaaacttggtaggtgcgggactg
tgccgcgattgtctggataagttagtcggctataagggaagtcccctagtttgggcatta
aacaacggggcaaaaagcgtcggtcgagttcaaagcgccacattgcacttgatttgtcag
cgcgaaaaagaaattcaaacatttgtaccccaagactactggagtgtctgggtagattat
gccgaaggattccgcgctttctacaaaggaacggcgaattctgacgcagacacgccagaa
caaaaagctgaaacgaatgatgatgccgcaaccagtacaacacaagcaccagaaagcaaa
cgtattctttcggaagccgaagcaaacaggttagttgcagaagcacgccgccatcctcat
caggtgattaagtttgaagggaaaatagttcaacgccaaccacctcctccattcaccacc
tctaccttgcaacaagcagctggttccaagctgagattttctccagacaaaaccatgcaa
gttgcccaaaagctttatgaggcagggttgattacatatatgcgaacagattcagtgatg
ttgagtcctgaattttgtgctagtgcgcgtcaatggttagagcaaaatgacccgcagaac
gtaccgcagtccttagccaaacatcggagtgctaaattagctcaagaagcacacgaagct
attcgcccaacagatgttttccgtccttcagccgagttacgagtagaactgccgacagat
gattttaacctgtatgtaatgatttggaaacgggcgatcgcttctcaatgtcgtgccgcc
caactccgcaaaactcaaatagttactcaatctggaaatctgctgtggctttgtaacgga
caagtagttgagttctacggttatgctcggtactggaataatatcagtaaagatacagtc
ataccgcagttgcaacagggacagatactaacattaaaagatgcacagcatgaaaagaaa
caaacacaaccgccgcctcgatatagcgaaccaaaactagtgcaactaatggaacgcaaa
ggtattggtcgtcccagtacctatgctcccaccgtcgccaccttgaaaaagcgcgattac
gtgcagttgaccaaggatcatctgcaaccaacggctttgggtttagaagttgatgcgttt
ttacaaaaagccttgccggatttactagaggcagaattcaccgctaagatggaagatgct
ctagatgcgatcgccattggtaaacaaggctggcaacaatatttaagtacttggaatcaa
gaatattttgcgccagctttagcaaaagccaaaactgttgctgtgagttctgcatctgga
aacaaagcttcaccgggacgagaacgcaaatatgaaacatccaaaactcgctgccctgaa
tgcaaaaattgtttagctaaaattcccagtagcaaagttaaaaagaaatacttcctcaaa
tgtgttagcggctgtgaaaacatcgtccttttttggagtgacctcagcaaaacttgggaa
tcacctcgaaacaaagtatccaaggatgaaagtattgctaaacctccagctaagctaact
tcatactcttgtccagtatgtaaaaaaccattagaagaatacagctacattaaggaaggg
cagaacaaaacaatgctacgttgttcaaacccccaatctcgccaagacaaaaaacatcag
caagtagcttatttttctacacaaaaaggttggtggagtcctaagtttggcgagttaaat
taa
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