Nostoc linckia: NIES25_12850
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Entry
NIES25_12850 CDS
T10227
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nlk Nostoc linckia
Pathway
nlk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nlk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES25_12850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nlk03019
]
NIES25_12850
03400 DNA repair and recombination proteins [BR:
nlk03400
]
NIES25_12850
Enzymes [BR:
nlk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NIES25_12850
Messenger RNA biogenesis [BR:
nlk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NIES25_12850
DNA repair and recombination proteins [BR:
nlk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NIES25_12850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
BAY74869
LinkDB
All DBs
Position
complement(1483808..1485250)
Genome browser
AA seq
480 aa
AA seq
DB search
MNQPTTKSWQEVLATFKTIWGYEDFRPPQGEIVSSLLAQKDALIIMPTGGGKSICFQLPA
LLQTGLTLVVSPLVALMENQVQELRENHQKAALLHSELPSSQRRATLQALERQQLRLLYL
SPETLLSAPVWERLSQPQLQINGLILDEAHCLVQWGDTFRPAYRRLGAVRPALLKSKPPG
TKICIAAFTATADPLAQKTIQTVLQLQQPEIFRLNPYRSNLHPSVRIAWTPRGRKQQLLK
FIQNRPQQSGLVYVRTRRDSEDLAQWLADMGYATASYHAGLGATERRAVEASWLSGKMPF
VVCTCAFGMGINKSNVRWVVHFQPPHLLSEYVQEIGRAGRDGKPAEALTLVSEPTGWLDP
EDKQRQQFFEQQMRSQQQIAQQLMKKLPKQGEVNLVTRQFPEAATALALLHSNGQLNWLD
PFHYTIEEKAKHQPATQLHATKQIHQYLTSKQCRWQFLLNAFGFGKEAANWRCGHCDNCR
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagccaacaacaaaatcttggcaagaagttctcgctacttttaaaacgatttgg
ggttatgaagatttccgtccgccacagggagagattgtcagcagtttgttagcccaaaaa
gatgcactaattattatgcccacaggtggaggtaagtcaatttgttttcaacttcctgca
cttctacaaacaggattaactttggtagtttctcccttggtggcgttgatggaaaatcaa
gtacaggaactacgagaaaaccaccaaaaggcagcacttttacatagtgaattaccttca
tctcaacgccgtgcaactctgcaagctttggaacgccagcagctaagattactgtattta
tctccagaaactttgttgagtgcgccagtgtgggaaagattatctcaaccgcaattgcaa
attaatggtttgattttggatgaagcccattgtttagtgcagtggggtgatacttttcgt
ccagcttaccgcagattaggggcggtacgtcctgcgttgctaaaatcaaaaccaccagga
accaaaatctgcattgcagctttcactgctactgctgaccccttagcgcaaaaaactatt
caaacagttttacaattacagcaaccagagatttttcggttgaatccttaccgttctaat
ttgcatcccagcgttcgcattgcttggacgccacgaggtaggaaacaacaattattaaag
tttattcaaaatagaccgcaacaatcaggcttagtttacgttcgcactcggcgagatagt
gaagatttagctcaatggttagcagatatgggttatgctacagcgagttatcatgcagga
ttgggtgcaacagaacgccgtgcagtggaagctagctggttgagtgggaaaatgccgttt
gtggtttgcacctgtgcgtttggaatggggattaacaaaagtaatgttcgctgggttgtg
cattttcagccgccacatctgctttcagaatatgtgcaagaaatcggccgcgccggaaga
gacgggaaaccagccgaagcgttaacgctggtgagcgaacctacggggtggttagatcct
gaagataagcaaagacagcagttttttgaacaacaaatgcgatcgcaacaacaaatagcg
cagcaacttatgaaaaaattaccaaagcagggagaagtgaacctagtaacccgacaattt
cccgaagctgctacagccttagctttacttcacagcaacggtcagttaaactggcttgac
ccttttcattacaccattgaagaaaaagcgaaacatcaaccagcgacgcaactacacgct
accaaacaaatacatcaatatcttacaagcaagcagtgtcgttggcagtttttgttaaat
gcgtttggttttggcaaagaagcagccaactggcgttgcggacattgcgataattgtcgc
tag
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