Nostoc linckia: NIES25_23990
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Entry
NIES25_23990 CDS
T10227
Name
(GenBank) DNA-directed RNA polymerase, beta subunit RpoB
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nlk Nostoc linckia
Pathway
nlk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nlk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIES25_23990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nlk03021
]
NIES25_23990
03400 DNA repair and recombination proteins [BR:
nlk03400
]
NIES25_23990
Enzymes [BR:
nlk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIES25_23990
Transcription machinery [BR:
nlk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIES25_23990
DNA repair and recombination proteins [BR:
nlk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIES25_23990
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BAY75950
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All DBs
Position
2839304..2842603
Genome browser
AA seq
1099 aa
AA seq
DB search
MTKETYMEPAFLLPDLIEIQRSSFRWFLEEGLIEELNSFSPITDYTGKLELHFLGQNYKL
KEPKYSVEEAKRRDSTYAVQMYVPTRLINKETGEIKEQEVFIGDLPLMTDRGTFIINGAE
RVIVNQIVRSPGVYYKSEIDKNGRRTYSASLIPNRGAWLKFETDRNDLVWVRIDKTRKLS
AQVLLKALGLSDNEIFDALRHPEYFQKTIEKEGQFSEEEALMELYRKLRPGEPPTVLGGQ
QLLDSRFFDPKRYDLGRVGRYKLNKKLRLSVPDTMRVLTSSDILAAVDYLINLEYDIGNI
DDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSDAEVLTPASLVNPKPLVAAI
KEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIE
TPEGPNAGLIGSLATHARVNQYGFLETPFRPVENGRVRFDLPPLYMTADEEDDLRVAPGD
IPVDENGHIIGPQVPVRYRQEFSTTTPEQVDYVAVSPVQIVSVATSMIPFLEHDDANRAL
MGSNMQRQAVPLLKPERPLVGTGLEAQGARDSGMVIVSRTDGDVTYVDATEIRVRPKPNT
PEIRYPLSKYQRSNQDTCLNQKPLVRIGEKVVAGQVLADGSSTEGGELALGQNIVVAYMP
WEGYNYEDAILISERLVQDDIYTSIHIEKYEIEARQTKLGPEEITREIPNVGEDALRQLD
EQGIIRIGAWVEAGDILVGKVTPKGESDQPPEEKLLRAIFGEKARDVRDNSLRVPNGEKG
RVVDVRLFTREQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRHGNKGIISRILPAEDMP
YLPDGSPVDIVLNPLGVPSRMNVGQVFECLLGWAGHTLGVRFKITPFDEMYGEESSRRIV
HGKLQEARDETSKDWVYNPDDPGKIMVFDGRTGEPFDRPITIGVAYMLKLVHLVDDKIHA
RSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAAYTLQELLTVKSDDMQGRNEAL
NAIVKGKAIPRPGTPESFKVLMRELQSLGLDIAVHKVETQADGSSLDVEVDLMADQSARR
TPPRPTYESLSRESLEDDE
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgactaaagaaacatatatggaacccgcctttctattacccgacttgattgaaatccag
cgttcaagctttcgctggtttttggaagaagggttgatagaggaactgaactcctttagt
ccgatcacagattatacgggcaaactagaactgcactttttgggtcagaactacaaactt
aaagaaccaaagtacagcgttgaagaagccaaacggcgggatagtacctatgccgtccaa
atgtatgttcccacacgcttgattaataaagaaaccggggaaatcaaagagcaagaggta
ttcattggagatttgcctttgatgaccgaccgcggcacctttattatcaacggagccgag
cgggtgattgtgaatcaaatagtgcgatcgccaggagtttattacaaatccgaaatcgat
aaaaacgggcggcgtacttattctgctagcttaattcccaaccggggggcatggctgaaa
tttgaaacagaccgtaacgatctggtgtgggtacgtatcgacaaaacccgcaaactctca
gcccaggtactattaaaagctttaggcttatcagacaacgaaatctttgacgccttacgc
cacccagaatatttccaaaaaaccatcgaaaaagaagggcaattttctgaagaagaagcc
ctcatggagttatatcgcaaactgcgtcctggcgaaccacccacagtcttaggcggacaa
caactcctagactctcgtttcttcgatccgaaacgttatgacttgggtcgcgttggtcgg
tacaagctcaacaaaaaattgcgcctttctgtgcccgacacgatgcgcgtgctgacctca
agcgatattttggcagcagtggattatctgatcaacctagagtatgacatcggcaatatc
gatgacatcgaccacttaggtaaccgtcgcgtgagaagcgtcggcgaattgctgcaaaac
caggtgcgggtaggcttaaaccgtctagaaagaattattcgggaacggatgacagtatct
gatgccgaagttttaactcctgcttccttggttaaccccaaaccactggtagcagcaatt
aaagaattctttggttccagccaattaagtcagttcatggatcaaactaatcccttagca
gaactgactcacaaacgccgcttgagtgcccttggccctggtggtttaacccgcgaacgt
gcggggtttgcagtgcgggatattcatcctagtcactacggacgtatttgccccattgaa
acaccagaaggcccgaatgcggggttgattggctccttggcgactcatgcacgggtgaac
caatacggctttttggaaacgccatttagacctgtggaaaatgggcgagtcagatttgat
ttgccgccactttacatgacagccgacgaagaagacgacctgcgggttgcacctggagat
attccagtagatgagaatgggcacattatcgggcctcaagtaccggtacgctatcgtcag
gaattctccaccaccacaccagagcaagtggactacgtagcggtatctcccgtacaaatt
gtatcagtagctaccagcatgattcccttcctggagcatgatgacgctaaccgagcgctg
atggggtcgaacatgcaacggcaagcagtacctctgctgaagccagagcgtccattggtg
ggcacaggtttggaagcccaaggtgcaagagactccgggatggtaatcgtatcgcgcacc
gatggcgatgtcacctacgtagatgccacagaaattcgggtgcgtcccaaacccaacact
ccagaaattagatatccactttctaagtaccaacgctcaaaccaagatacttgtttgaac
caaaagcccctcgtccgcattggcgaaaaagttgtggcaggtcaagtgctagctgatggc
tcctctactgaaggcggtgaattggcgctcggacaaaatatcgtcgttgcttatatgcct
tgggaaggctacaactacgaagacgcaattttaatttctgagcggctggtgcaggatgat
atctacacctcaattcacattgaaaaatatgaaattgaggctagacagacgaaactgggg
ccagaagaaatcaccagagaaattcccaacgtcggggaagatgctttgcgccagttagac
gaacaagggatcattcgcattggggcatgggtagaagctggggatatcttggtaggtaaa
gtcacacccaaaggtgaatctgaccaaccaccagaagaaaaactcttgcgggcgattttc
ggtgaaaaagcgcgggatgtgcgcgacaattccctgcgagtacccaacggtgaaaaaggg
cgcgtagttgacgtgcgcttatttacccgcgaacaaggcgatgaattgccaccgggagcc
aacatggtagtccgggtgtatgttgcccaaaaacgcaaaatccaagtcggcgacaaaatg
gcaggacgccacggcaataaagggattatttctcggatattgccagcagaagatatgcct
tatttgcccgatggttcgccagtggacatcgtactcaatcccttgggcgtacccagccgg
atgaacgtcggacaagtatttgagtgcctcttgggttgggctggtcatactttgggagtg
cgatttaagattactccctttgacgaaatgtatggtgaagagtcatcccgaagaatcgtg
catggcaaattacaagaagcacgggatgaaaccagcaaggactgggtatataacccagat
gatccaggtaaaatcatggtgtttgatgggcgtactggcgaaccctttgaccgaccaatc
accattggcgtggcttacatgctgaaactggtgcatttggtagacgataagatccacgcc
cgttccacaggcccgtactcactggtgacccagcaacccttgggtggtaaagcacaacaa
ggcggtcagcggtttggggaaatggaagtgtgggcattggaagcctttggtgcagcttac
accttacaggaattgctgacagtgaaatccgacgatatgcaaggacggaatgaagcgtta
aatgcgatcgttaaaggtaaggcaattcctcgacctggaacaccagagtcctttaaggtg
ttaatgcgcgaactacaatccttggggttagatattgcggtacacaaggtagaaacccaa
gcagacggtagttccttagatgtggaagtcgatttgatggcagaccaatcagcccgccgt
acacctcccagacccacctacgaatctctttcccgcgaatcgctagaagacgacgaatag
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