Nostoc linckia: NIES25_24010
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Entry
NIES25_24010 CDS
T10227
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit rpoC2
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nlk Nostoc linckia
Pathway
nlk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nlk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NIES25_24010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nlk03021
]
NIES25_24010
03400 DNA repair and recombination proteins [BR:
nlk03400
]
NIES25_24010
Enzymes [BR:
nlk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NIES25_24010
Transcription machinery [BR:
nlk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NIES25_24010
DNA repair and recombination proteins [BR:
nlk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NIES25_24010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Biotin_lipoyl_2
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BAY75952
LinkDB
All DBs
Position
2844747..2848811
Genome browser
AA seq
1354 aa
AA seq
DB search
MTEKMIFRNRVVDKGQLRNLISWAFTHYGTARTAVMADKLKDLGFRYATKAGVSISVDDL
MVPPTKRSLLEAAEEEIRATEARYQRGEITEVERFQKVIDTWNGTSEALKDEVVVHFKKT
NPLNSVYMMAFSGARGNISQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYIISS
YGARKGLVDTALRTADSGYLTRRLVDVSQDVIIREFDCGTTRGIPIRPMTEGAKTLIPLA
NRLMGRVIGEDVVHPVTKEVIAPRNTPISDDLAKEIGRSGVGEVVVRSPLTCEAARSVCQ
HCYGWSLAHAKMVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVAQQVRSKIDGT
VKIPRKLRTRQYRTRHGEDALYVEANGVIILEPKKEGDATPGNQEVQLTQGSTLYVFDGN
QVKQGQLLAEVALGGRTTRTNTEKAVKDVASDLAGEVQFAEVVPEQKTDRQGNTTTTAAR
GGLIWILSGEVYNLPPGAELVVKNGDAIASNGVLAETKLTTLHGGVVRLPEATPGKSTRE
IEIITASVVLDQATVTVQSSQGRNNYLVSTGNNQVFNLRATPGTKVQNGQVVAELIDDRY
RTTTGGFLKFAGVEVQKKGKAKLGYEVVQGGTLLWIPEETHEVNKDISLLLVEDGQFVEA
GTEVVKDIFCQNSGVIEVTQKNDILREVVVKPGELLMVDDPEAVMGRDNTFVQPGEEFQG
SVATELRYIQYVETPEGPALLSRPVVEFAVPNNPDVPSTTSVSQQTGRSIQLRAVQRLPY
KDSERVKSVEGVELLRTQLVLEIEQEGEQDHNASPLAADIELVQDTEDEEVQRLQLVILE
SLVIRRDITADATQGSTQTTLEVQDGLTIAPGSVVARTQILSKEGGIVRGVQKGTENVRR
CLVLRETDMITVNTSTQPKVKAGDLLVAGTEVATGVFADESGQVIDVKKLTSAESKALSG
ENSQDSALSTQNYAITIRVGRPYRVSPGAVLQIEDGDLVQRGDNLVLLVFERAKTGDIIQ
GLPRIEELLEARKPKEACILTRRAGEVKVVYGDGDEAIAIKVVESNGVVTDYPLGPGQNL
IVPDGSHVSAGQPLTDGPSNPHEILEIFFSLGSEDGVYACASHALQKVQTFLVNEVQMVY
QSQGIDISDKHIEVIVRQMTNKVRIDDGGDTTMLPGELVELRQVEQVNEAMSITGGAKAQ
YTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGT
GYNTYEETSAIDDYATDISSSVLDEVDDPLDMVLDDRTARNYNLDSPTLGEPSYGNRRAE
RSILDDDDDLIADEVADEEDYEDDDDDDDDFDDE
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaaaaatgatttttcgcaatcgggtggtggataagggtcaactgagaaatttg
atttcttgggcctttacgcattatggtacggcgcgaaccgcagtcatggcggacaaactc
aaggatttgggttttcgctacgccaccaaagcaggggtttccattagtgtagatgacttg
atggtgcctcctactaagcgatcgctcctggaagcagccgaagaagaaattcgcgccact
gaagctcgttaccaacggggtgaaatcactgaagtagaacgcttccaaaaggtaattgat
acctggaacggtactagtgaagcgctaaaagatgaggtagttgtccacttcaaaaagact
aatcccctcaactccgtgtacatgatggcattctctggggcgcggggtaacatctcccaa
gtccgccaattggtgggaatgcgggggctgatggcagatcctcaaggggaaattatcgac
ttgcccatcaaaaccaacttccgcgaaggcttgacggtgacggaatacattatttcgtct
tacggcgccagaaaaggattggtggataccgccttgcggacggctgactctggttatctc
acccgacgtttggtggacgtatcccaggatgtgattattcgggaattcgactgcggcacc
actagaggcattcctattcggccaatgacagaaggtgccaaaactttgattcctctagca
aaccgcttgatggggcgggtaattggcgaagacgtagtgcatccagtcacaaaagaagtg
attgcaccacgcaataccccaatttctgacgacttggcgaaggaaattggtaggtctggg
gtgggagaagttgtagtgcggagtcccctaacttgtgaagctgcacgttctgtctgtcaa
cattgttatggctggagtttagcccatgccaagatggtggacttgggcgaagctgtgggg
atcattgctgcccaaagtatcggcgaaccaggtactcagctaaccatgcggacattccac
acaggtggtgtgtttaccggggaagtggcacaacaagtccgttctaaaattgatgggact
gtgaaaattccccgcaaattacggacaagacaatatcgtacccgccacggggaagatgcc
ttatatgttgaggctaatggcgtcatcattttggaacctaaaaaagaaggcgatgccaca
ccaggtaaccaagaggtgcagctaactcaaggttctacattatatgtatttgacggcaat
caggtaaaacaaggccagttgttggcagaagtcgcccttggtggacgcacaactcggact
aatacagaaaaagccgttaaagatgtggcttctgacttggcaggggaagtgcaatttgcc
gaagtcgttcctgaacaaaaaaccgaccgtcaaggcaacaccacaaccacagccgcacgc
ggtggtttgatttggattttgtctggggaagtttacaacttgccgcctggtgccgaattg
gtggtgaaaaatggtgacgcgatcgcttctaatggagtattagcagaaaccaaattaact
actctccacggtggtgtggtgcgcttgcccgaagctaccccaggtaagagtaccagggaa
attgaaattattaccgcttctgtagtcttagaccaggcaacggtaacagtccaaagttcc
caaggtcgcaataactacctagtttccactggcaacaaccaagtatttaacctccgcgcc
acaccaggcacaaaagtgcaaaatggtcaagtggtagctgagttaattgatgaccgctat
cgcacaaccactggtggcttcctgaaattcgcgggcgtggaagtccagaaaaaaggcaaa
gccaaactgggttatgaagttgtccaaggcggtacgctgttgtggattcccgaagaaacc
cacgaagttaataaagatatctctttgcttttggtagaagacggtcagtttgtggaagct
ggcaccgaagttgtgaaggatatcttctgccaaaacagcggtgtgattgaagttactcag
aaaaacgacatcctccgagaagtggtcgtgaagccaggggaactgctaatggtggacgat
cccgaagcagttatgggacgagataacaccttcgtccaaccaggcgaggaatttcaaggc
agtgtcgccacggaattacgctatatccagtatgtggagacaccagaaggcccagccctg
ttaagtcgtccagtagtcgagttcgccgtaccgaacaatccggacgtgccatcaaccaca
tcggtaagtcaacaaactgggcgttccattcagttacgtgcagtacaacgactgccttac
aaggattccgaaagagtgaaatctgtagaaggtgtggaattgctgcgaacccagctagtg
ctggaaattgagcaagaaggcgaacaagaccacaacgcttcccccctagcagcagatatt
gaattggtgcaggataccgaagacgaggaagttcaacgcttgcagctggtgattttggaa
tctttggtaattcgtcgagacattaccgctgatgcaacccaaggtagcacccagacaacg
ctggaagttcaagatgggctaactatcgcccctggttccgtcgtcgcgcgtacccaaatc
ttgtctaaagaaggcgggatagtccgaggcgtgcaaaagggaaccgagaatgtgcgtcgc
tgcttggtattgcgggaaactgacatgattaccgtaaatactagtactcagccgaaagtg
aaggcgggtgacttgcttgtagcaggcacagaagttgccactggagtttttgctgacgaa
tctggacaggtaatcgatgtcaaaaaattaactagtgctgaatctaaagcgctgagtgga
gaaaattctcaggactcagcactcagcactcagaattacgccattactatccgtgtcggt
cgtccttaccgagtcagccctggggctgtcttgcaaatagaagacggcgatctggtacaa
cggggtgataatttggtgctgttggtatttgaacgcgccaaaactggagacattattcaa
ggtttgccccggattgaagagttgctcgaagctcgtaaacctaaggaggcgtgtatctta
acacggcgggcgggagaagtcaaggtagtttatggtgatggtgatgaagcgatcgccatt
aaggtcgtagaatcaaatggcgtagtcacagattatcctctgggcccaggacaaaattta
attgtgccagatggctctcatgtgtcagccggacaaccgttgaccgatggcccatctaac
ccgcatgaaattttggaaatcttctttagcttgggttccgaagacggagtttatgcttgt
gctagccacgctttgcaaaaagtacagacattcttggtgaacgaagtgcaaatggtgtat
cagtctcaagggattgatatttccgataaacacattgaagtaattgttcgccagatgacc
aacaaagtcaggattgatgatggtggtgacaccacaatgcttcctggcgaattggtggaa
ctgcgccaagttgagcaggtgaacgaagcaatgtcaattacaggtggtgcaaaggcacag
tatactccagtattattggggataactaaggcatctttgaacaccgacagctttatttct
gctgcatccttccaagaaacaacacgggtacttaccgaagcagctattgaagggaaatct
gactggctgcggggattaaaggaaaacgtaattatcgggcggttgattccagctggtact
ggttacaatacttatgaagaaaccagtgcgatcgatgactatgctactgatattagtagt
agtgtcttagatgaagttgatgaccccctcgatatggtcttagatgaccgcacagctcgc
aactataatttagattctccaactctgggagagcctagttatgggaacagacgtgcagag
aggtcaatcttagatgacgatgatgacttaatcgccgatgaagtagccgatgaagaagat
tacgaagacgatgacgacgacgatgacgatttcgacgacgaataa
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integrated database retrieval system
