Nostoc linckia: NIES25_30080
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Entry
NIES25_30080 CDS
T10227
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
nlk Nostoc linckia
Pathway
nlk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nlk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIES25_30080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nlk03019
]
NIES25_30080
03016 Transfer RNA biogenesis [BR:
nlk03016
]
NIES25_30080
Enzymes [BR:
nlk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NIES25_30080
Messenger RNA biogenesis [BR:
nlk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NIES25_30080
Transfer RNA biogenesis [BR:
nlk03016
]
Prokaryotic type
tRNA degradation factors
NIES25_30080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
TLN1-like_RS
KH_NusA_1st
KH_N4BP1_2nd
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
BAY76556
LinkDB
All DBs
Position
3548914..3551070
Genome browser
AA seq
718 aa
AA seq
DB search
MAEVDKSISFDGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRSQAREGIDFLPLTVD
YEERLYAAGRIPGGIMRREGRPPEKTILTSRLIDRPLRPLFPSWLRDDLQIVALTLSMDE
LVPPDVLAVTGASIATLIAQIPFNGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLIVAGS
PHGVIMVEAGANQLPERDIIEAIDFGYEAVRDLIKAQEDLVAELGLQLVQEAPPEVDATL
ENYIRDRANDEIKKILSQFDLGKPERDAALDVVKEKIETAIAELPEEDPIKVAATANSKA
LGNTFKDITKYFMRRQIIEDNVRVDGRKLDEVRPVSCQIDLLPKRVHGSGLFNRGLTQVL
SACTLGTPGDAQNLNDDLQIDQSKRYIHHYNFPPFSVGETKPLRAPGRREIGHGALAERS
LLPVLPTKEQFPYVIRVVSEVLSSNGSTSMGSVCGSTLALMDAGVPIIKPVSGAAMGLIK
EGDEVRVLTDIQGIEDFLGDMDFKVAGTDSGITALQMDMKISGLSLDVIAQAIHQAKSAR
LHILEKMLACIAQPRTETSPYAPRLLTIKIDSDMIGLVIGPGGKTIKGITEETGAKIDIE
DDGTVTISAVDEGKAKKARSIIQGMTRKLHEGDVYVGRVTRIIPIGAFVEFLPGKEGMIH
ISQLADYRVGKVEDEVAVGDEVIIKVREIDNKGRINLTRLGIHPDQAAAAREAAALNR
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagttgataagtcaatatccttcgatggacgggatattcgactgaaagtaggc
ctactagctccccaagctggtgggtcggttttgatagaatcaggggatacagctgttttg
gtgacggctacgcgatcgcaagccagagaaggcattgattttcttcccctcacagtagat
tacgaagaaaggctatatgccgctggtagaattcccggcggaattatgcggcgcgaaggt
cgtccaccagaaaaaacaattcttaccagccgtctgatagatcgtcctctgcgtcctttg
tttccttcatggttacgcgatgacttgcaaattgtggctttaacactgtcgatggacgag
ttagtgccacccgatgtgctagcagttacaggtgcttcaattgctaccctcattgctcag
attccttttaacgggccaatggcagccgtgcgggttgggttagtgggagatgattttatc
atcaatcctacctatgcagaaattgaagccggagatttggatctgatagtagcaggttcg
ccgcatggtgtgattatggtcgaggcgggagccaatcaattgccagagcgagatattatc
gaggcaattgactttggttatgaagcggtacgggatttaatcaaagcccaggaagattta
gtcgcagaactcggtttacaactagtgcaagaagcaccaccagaagtagacgcaacgctg
gaaaattatatccgcgatcgcgccaacgacgaaattaaaaaaattctgtctcaatttgat
ttgggtaaacccgaacgtgatgccgctttagatgtcgtcaaggaaaaaattgaaactgcg
atcgccgaactgccagaggaagacccaatcaaagttgctgcaactgcaaactctaaggca
cttggtaatacatttaaagacattactaaatacttcatgcgccgtcaaatcatcgaagat
aacgtccgcgttgatggtcgcaaactcgatgaagtacgtcccgtttcctgccaaatagat
cttttgccaaagcgagtccacggtagcggtttatttaatcggggtttaacccaggtatta
tctgcttgtaccttgggtacaccaggagatgcccaaaacctcaacgacgatttgcaaatc
gaccaatccaaacgctacatccaccattacaacttcccgccgttctcagtcggggaaacc
aaacccttacgtgcgccgggaagacgtgaaatcggtcacggtgccttagcagagcgatcg
ctgttgcctgtgctaccaacaaaagaacaattcccttacgtgattcgcgtcgtatcggaa
gttctttcttccaacggttccacctcaatgggttctgtgtgcggttccaccctggcctta
atggatgctggcgtgccaattatcaaacccgtcagtggtgcggcaatgggtttaataaaa
gaaggagatgaagtccgtgtcttgactgatattcaaggcattgaagactttttgggcgac
atggactttaaagttgctgggacggatagcgggattacagccctgcaaatggatatgaaa
atttccggcctgtctttagacgttattgcccaagccatccaccaagcgaaatcagcccgg
ttgcacattctggaaaaaatgctcgcttgcattgcccaaccgcgcaccgaaacttcaccc
tatgccccacgtctgttaacaatcaagattgattcagacatgattggtctagtcattggt
cccggaggcaagactatcaagggaattaccgaagaaactggtgcaaaaattgatatcgaa
gacgatggcacagtgacaatttccgctgtggatgagggcaaagcgaagaaagcacgtagt
attattcaaggcatgacccgcaagctgcacgaaggggatgtctacgtagggcgcgtaact
cggattataccaataggcgcatttgtggaatttctgcctggaaaagaaggcatgattcac
atttctcaactagctgactaccgcgttggcaaagttgaagatgaagtcgcagtaggcgat
gaagtgattatcaaagtgcgcgaaattgataacaaaggccggattaatcttacacgcttg
ggtatccacccagatcaagcagcagcagcaagggaagctgcggcgctaaatcgttaa
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