Neisseria leonii: ORY85_03735
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Entry
ORY85_03735 CDS
T10281
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nln Neisseria leonii
Pathway
nln03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ORY85_03735 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nln03400
]
ORY85_03735 (mfd)
Enzymes [BR:
nln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ORY85_03735 (mfd)
DNA repair and recombination proteins [BR:
nln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ORY85_03735 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
MFD_D3
Helicase_C
ResIII
AAA_30
UB2H
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WWV75508
LinkDB
All DBs
Position
762233..765667
Genome browser
AA seq
1144 aa
AA seq
DB search
MTYPLPAPARKSHWLDLTRGSLPWALARHLPADRLKVILTQDAEQALRIQTAWQFFRPQD
RAVFLPDWETLPYERFSPHQDLVSERLAALWQVKSGQADVLVVPVATAMQKLTPVPFLLG
RTFWLQTGQTIDIEALRGNLVQAGYSAVSHVVAAGEFAVRGGILDIFPTGAELPYRLDLF
GDEIDSIKTFDPDSQRTLAPVSEIRLLPAHEFPTDADAQKIFRARFREEIDGNPNAATVY
QAVSDGRFGAGVEYYLPLFFEDGCATLFDYIGENALMACIGDVHTEASRFWADVKSRFAM
AQGDETYPPLPPPHLYLSEDQFSGRLKAYGQILPDLNGSSHALPDVAVNRQSETPLAALH
AFQTAFDGRILLTAESAGRRETMLGFFAQHGLKPKSVAGWQAFLDSGAPLAITVTPLAYG
FQLPPEHLSGSLKTDRQPETPLAVITESELYQYVAKSRSANRRKKHAQVSDGLLRDLAEI
NIGDPVVHEEHGIGRYMGLVTLDLGGETAEMMLLEYAGGAQLYVPVSQLHLISRYSGQAH
ENVQLHKLGGGAWTKAKRKAAEKARDTAAELLNLYAQRAAQEGFRFQFNELDYQAFSDGF
EYEETEDQAAAIAAVIKDLTQAKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAVLAP
TTLLVEQHAQNFAGRFADFPVKVAALSRFNSSKATAETLKGMAEGTVDIVIGTHKLVQDD
IQFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLIT
TAPSRRLAVKTFVKPFSEGSVREAVLRELKRGGQVFFLHNEVETIENMRERLEALLPEAR
IGVAHGQLRERGLEQVMRDFLQQRFNLLLCSTIIETGIDIPNANTIIINRADKFGLAQLH
QLRGRVGRSHHQAYAYLFTPEYLTKDAEKRLDAISAADELGAGFALAMQDLEIRGAGEIL
GEGQSGEMMQVGLTLYTEMLKQAVRDLKKGRQPDLDAPLGVTTDIKLHSPALLPEDYCPD
VHERLVLYKRLATCENEAQINAVHEELVDRFGLPGQPVKTLIESHRIRLIAEEMGIDAVD
ASGEAVTFTFGKAHSLDPTHIIMLMQQNKNWRMAGPDRLRVAAVSDNIETRIRTVKNLLK
QLRV
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgacttaccccctccccgcacccgcccgaaaatcccactggcttgatctgacgcgcggc
agtctgccgtgggctttggcgcggcatctgcccgcagaccggctcaaagtgattctgacc
caggatgccgaacaggctttgcgcattcagacggcctggcagtttttccgcccgcaggac
agggccgtcttcctgcccgactgggaaacgctgccttacgaacgcttttcgccgcatcag
gatttggtttccgaacggctggccgcgctgtggcaggtcaaaagcgggcaggccgatgtg
ctggtggtgccggtggccacggcgatgcagaaactcacgccggtgccgtttctgctgggg
cgcacgttttggctgcaaacggggcagaccatagacatcgaggccttgcgcggcaatctg
gtgcaggccggttacagcgcggtttcccatgtggtcgcggcgggcgaatttgccgtgcgc
ggcgggattctggacatttttccgacgggggcggagctgccctaccgtttggatttgttc
ggcgacgaaatcgacagcatcaaaaccttcgaccccgacagccagcgcacacttgcgccc
gtttccgaaatccgcctgctgccggcgcacgagtttcccaccgatgcagacgcgcaaaaa
attttccgcgcccgcttccgcgaggaaatcgacggcaacccgaacgccgctactgtttat
caggccgtcagcgacggacgtttcggcgcgggcgtggaatattacctgccgctgtttttt
gaagacggctgtgccacgctgttcgactacatcggcgaaaacgcgctgatggcctgcatc
ggcgacgtgcacaccgaagcgtcgcgcttttgggcggatgtgaaaagccgctttgcgatg
gcgcagggcgacgaaacctacccgcctttgccgccgccgcacctgtatttgagtgaagac
caattctcaggccgtctgaaagcctacggccaaatcctgcccgatttaaacggcagcagc
cacgcgctgcccgatgtggcggtgaaccgccaatccgaaaccccgcttgccgcgctgcac
gcgtttcagacggcctttgacggccgtatcctgctgaccgccgaaagcgcgggacggcgc
gaaaccatgctcggctttttcgcccaacacggcctgaaaccgaaaagtgtggccggctgg
caggcgtttttggacagcggtgcgccgctggcgattacggtaacgccgctagcttacggc
ttccaactgccgccggaacacctttcaggcagcctgaaaaccgacaggcagcctgaaacc
ccgcttgccgtcattaccgaatctgagctgtatcaatatgttgccaaaagccgcagtgcc
aaccggcgcaaaaagcacgcgcaggtttcagacggcctgctgcgcgatttggccgaaatc
aatatcggcgaccccgtcgttcacgaagaacacggcatcggccgctatatggggctggtc
acgctggatttgggcggtgaaaccgccgaaatgatgctgctcgaatatgcgggcggggcg
cagctgtatgtgccggtatcgcaactgcacttaatcagccgctactcgggacaggcgcac
gaaaatgtgcagctgcacaaactgggcggcggcgcatggacgaaagccaaacgcaaagcc
gccgaaaaagcacgcgatactgccgccgaacttctgaatctctatgcgcaacgcgccgca
caggagggcttccgattccagtttaacgaattggattatcaggcgttttcagacggcttc
gaatatgaggaaaccgaagatcaggctgccgccatcgccgccgtcatcaaagatttgacc
caagccaaaccgatggacaggctgatttgcggcgatgtcggtttcggcaaaaccgaagtc
gcgctgcgggcggcatttgttgccgtgatgggcggcaaacaggtggccgtattggcaccg
accacgctgctggtcgaacagcacgcacaaaacttcgccggccgcttcgccgattttccc
gtcaaagtcgccgccctgtcgcgcttcaacagcagcaaagccaccgccgaaacgctcaaa
ggcatggccgaaggcacggtagacatcgttatcggcacgcacaaattggtacaggacgat
attcaattcaaaaatttggggctggtgattatcgacgaagaacaccgcttcggcgtgcgc
cagaaagagcagctcaaacgcctgcgcgccaatgtcgatattttaacgatgaccgccacg
ccgattccgcgcacgctgagcatggctttggaaggcctgcgcgacttttcgctgattacc
accgcccccagccgccgtctggcggtgaaaacctttgtcaaaccgttcagcgaaggcagc
gtgcgcgaagccgtactgcgcgaactcaaacgcggcgggcaggtgttcttcctgcacaac
gaagtggaaaccatcgaaaatatgcgcgagaggctggaagccctgctgcccgaagcgcgt
atcggcgtggcccacggccaactgcgcgaacgcgggttggaacaggtgatgcgcgacttt
ttgcagcagcggttcaacctcctgctctgctccaccatcatcgaaaccggcatcgatatt
cccaacgccaacaccatcatcatcaaccgcgccgacaaattcggcctcgcccagctgcac
cagctgcgcggccgcgtcggccgcagccaccatcaggcctacgcctatctgttcaccccc
gaatacctgaccaaagacgcggaaaaacgtctggacgccatttcggcggccgacgaattg
ggcgcgggcttcgcgctggcgatgcaggatttggaaatccgcggcgcgggcgagattttg
ggcgaaggccaaagcggcgaaatgatgcaggtcggcctgacgctgtacaccgaaatgctc
aaacaggccgtccgcgacctgaaaaaaggccgccagcccgatttggatgcgcccctgggc
gtaaccaccgacatcaaactgcacagccccgccctgctgcccgaggattactgccccgac
gtacatgaacggctggtactgtacaaacggctggccacctgtgaaaacgaagcgcaaatc
aacgcggtacacgaagaactggtggaccgtttcggcctgcccgggcagccggtcaaaacg
ctgatagaaagccaccgcatccgtctgattgcggaagaaatgggcatagacgcggtagac
gcttcgggcgaagcggtaacgtttactttcggcaaagcgcacagtctcgaccccacccac
atcatcatgctgatgcagcagaacaaaaactggcgcatggccggccccgacaggctgcgc
gtggccgcagtatcggacaatatcgaaacgcgcattcgcacggtgaaaaacctgctgaaa
cagttgcgcgtctga
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