Neodiprion lecontei (redheaded pine sawfly): 107217509
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Entry
107217509 CDS
T09006
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107217509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nlo03021
]
107217509
Enzymes [BR:
nlo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107217509
Transcription machinery [BR:
nlo03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
107217509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
107217509
NCBI-ProteinID:
XP_015510551
UniProt:
A0A6J0B8P9
LinkDB
All DBs
Position
3:7911492..7922304
Genome browser
AA seq
1691 aa
AA seq
DB search
MYKQLKSGMTMSAKHLVLENLEFSMFTNEDIRNLSVTKISTPLSFNILGNPLKGGLYDPV
LGPVSEKSDPCGTCGGNITKCSGHFGHIDLPLPVVNPLFHKQLASIIKLTCLRCFKLQVP
EPMKLLLVAKIKLLDEGFVSGLSDLEQEVQSIIAAGGDGTGTVEFVKEVIEAHVERLHNR
QRLNHIVPLLAEENRSNARNVNMQRWMHVENILRQFQSVPICIHCQDSIPKISTFRNRIM
TTKSANDELDASKIKRGIVRRLETVLMMPDQTQKYLRELWNTERDVLKIIMPCLSTVHTE
YPTDILFFSIIPVLPPIVRPVNYVNGQLIEHPQSQVYKAIIQDCLVLRNIIQTIQDGDTS
KLPEEGRIVFEQIRGNSPSEKLHNAWQQLQANVDHLMDRDVNKTTESANCQGLKQVIEKK
EGVIRMHMMGKRVNFAARSVITPDPNLNIDEIGIPEAFALKLTYPVPVTPWNVAELRQMI
INGPNVHPGAVLVEGEDGSTTRISASAAVQRESIAKRLLTTSVKATKFFNGVKIVHRHLH
NGDILLLNRQPTLHKPSIMAHKARILKGEKTLRLHYANCKAYNADFDGDEMNAHFPQNEL
ARSEGYNIANVSNQYLVPKDGTPLSGLIQDHMVSGVRLTLRGKFFSREDYMQLVYCALSD
IQGDITLLPPAIIKPKLLWSGKQLLSTVIINVTPRGKAKINLAASTKIGPKAWEARKPRR
WKCGTEFSDPKTMSEAEVVIRNGELLTGVLDKIHYGATPYGLIHCVYELYGGTYSSRMLS
AFGKLFQAFLQRDGFTLGIEDILILSNADEERAKFIESCRKIGESTQKSVLELPEDTPMT
EVKSKIQESYLINSKFQAQIDRKYKTALDVYTNDINKTCLPAGLLKKFPDNNLQLMVQSG
AKGSTVNTMQISCLLGQIELEGKRPPLMISGKSLPSFAAYDPMPRAGGFIDGRFMTGIQP
QEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLTVSYDSTVRDSDGSLVQLYYGE
DGLDVPSSQFLKKEQLDFLVHNRNAIVEKELLSRLKEDLSTEHILKSGRKMQRWMKKHGD
PLQKRRNSEFTKFSEKNRLSDPKYNKINQVCGRSKGALRLMREWVNTDEETKESYKCSRC
PDPVFSKYKQDSNYGVLTERIEGLINDYISKRKVENSADISEDELRDLLSFKVMKTLCQP
GEPVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMMASKNIKTPSMEIP
FRPNLENIEKQSNKLRLKLTRCTLSNVLRSIDVDGRLEIEPQRRMTYKLTIKFLPHKSYK
REYCVKRKYVLQATEYLFFRELFKEIKKAAQVPGALLYTEENKEPANDDQLDADDPESAP
SSQTKGRLDFGEMHESSDEDEAAEDADATAARSLSRHQENQEYDDPDETSDDSDENEDEK
MRDDKTVATESNRAEETEKSEFENLLAEKRKKLIVDMYPHAIEYDFDDKKYLSCELRFWL
PLKMSKLDLSTIIRSVAEKVVLWETPQIKRAFTFQNLNNETVLKTDGINIVEMFKYNEIL
DLNRLYSNDIYGISQTYGIEAANRVIVKEVKDVFKMYGITVDPRHLLLIADYMTFDGTFQ
PLSRKGMENSASPLQQISFESSLTFLKNATLHNKRDDLVSPSSRLIIGQPCKSGTGSFDL
MHRMERYILGQ
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
atgtacaagcaattaaaatcaggcatgacaatgtctgcaaaacatctggtcctagagaac
ctggaattttcaatgtttactaacgaggatattcgcaacttaagcgttacaaaaatcagc
acacctttgtctttcaacattttgggcaatccactgaaaggcggactctatgacccggtg
ttaggtccagtgagcgaaaagtcagatccctgtggaacatgtggcggaaatataacaaaa
tgttcgggacactttggacacatagacttgccattgcctgtggtaaatccgttattccac
aagcagctggctagcatcatcaaattgacttgcttgcgttgtttcaaactgcaagtacca
gagcctatgaaactgttgttggtagctaagataaaactgttggacgaggggtttgtctca
gggcttagtgatttggaacaagaagttcaatccattatagctgccggcggcgatggtact
ggaacagttgaattcgttaaagaagttattgaggctcatgtagagaggcttcataatcgt
cagaggttaaatcacattgtgccccttcttgctgaagagaatcgttctaatgcaagaaat
gttaatatgcaaagatggatgcacgtcgaaaatatactcaggcaatttcaatctgtacct
atctgcatacattgtcaagatagtatcccaaaaattagtacgttcagaaaccgaattatg
actactaaatcagccaatgatgagctggatgcaagcaaaattaaacgaggaatcgttaga
cgactggaaactgttctgatgatgccagaccagacgcaaaagtatttgcgtgagctctgg
aatacagaaagagatgtattgaaaataataatgccttgtttgagtacagtgcatacggaa
tatccaacagacattctgttcttcagtataatacctgtacttccaccgatcgtaaggcca
gttaactacgtcaatggacaactgatagaacatcctcaatcccaagtctataaagctatt
atacaggattgcttggtgctcaggaacattatacaaacaattcaagatggagacacttca
aaacttcccgaagaaggccgaattgtttttgaacaaataaggggaaattcgccgtcggaa
aaacttcataatgcttggcagcagctccaagcaaatgtcgatcatctgatggatcgtgat
gtaaataaaacgacggaatcagcaaactgccaggggctgaaacaggtgattgagaagaaa
gagggtgtcattcgcatgcacatgatggggaaacgggtgaattttgcagcaagatcagtc
atcactccagatcctaatttaaacatcgacgaaattggtatccccgaagcttttgctttg
aagctgacttacccagttccggtaacaccttggaatgttgccgaattacgacaaatgata
attaacggaccaaacgtacatccaggggcagttttggtggagggtgaagatggctcaaca
actcgtataagcgcgagtgcagctgtgcaaagagaatcaattgcaaaacgacttttgact
acaagcgtcaaagcgaccaaattttttaatggcgtaaagatagttcaccgtcatttgcac
aatggagatatcttgcttttgaatcgtcaacctactttgcataagccaagtatcatggcc
cataaagccaggatattgaaaggggagaaaacgttgcgccttcactatgccaattgtaaa
gcttacaacgctgactttgacggagatgaaatgaatgcgcattttccacaaaacgaactt
gctcgaagtgaaggatacaatatagccaacgtttctaaccagtaccttgtcccgaaagat
ggtacaccattaagcggtttgattcaagatcacatggtttctggagtacgtttgactctc
agaggaaaattcttttcaagagaagactacatgcagttagtttactgcgcattatcagat
attcagggtgatataacgctattaccacctgccattatcaaaccaaagttattgtggtca
ggcaaacaattgttatcaacagtcataattaatgttacaccacgtggcaaagcgaagatt
aatcttgcagctagcacaaaaattggcccaaaagcatgggaagctaggaagccgcgacgt
tggaaatgtggcaccgaattcagtgatccaaaaacaatgtcagaagctgaagtagttata
cgtaatggcgaactgctaaccggtgttctcgacaagattcattacggtgctacaccttat
ggcttgatacattgcgtatacgagctttacggtggtacatactcaagcaggatgctgagt
gcgtttggaaaattattccaagcatttcttcagagagatggctttactttgggaatagaa
gatatcttaattctttcaaacgctgatgaagaacgtgcgaaattcatcgagtcatgtaga
aagataggtgaaagcacccagaaatcagtgcttgagttgcctgaagacacaccgatgaca
gaagtcaaatcaaaaatacaagaatcctatttgataaattccaagttccaagcgcaaatc
gatcgtaaatacaaaactgctctggatgtctatacgaatgacataaacaaaacatgcctg
ccagctggactcctcaaaaaatttccggataataatttgcaacttatggttcagtccgga
gcaaaaggttcgactgttaacaccatgcagatttcttgtctacttgggcaaatcgaattg
gaaggaaagagaccgccgcttatgatcagtggcaaaagtcttccctctttcgctgcttat
gatccaatgccaagagcaggcggttttattgacggtcgttttatgacgggaatccaaccc
caagagttcttcttccattgcatggcaggcagagaagggctgattgatactgcggtgaaa
accagtagatctggatacttgcagaggtgtttaattaagcatttggaaggcttaacagtc
agttacgactcaaccgttcgcgattctgacggcagtttagttcagttatattacggagaa
gatgggctcgatgtaccgagttctcaatttctgaaaaaagaacaactggattttttggtc
cataatagaaacgcgattgttgaaaaggaattgctaagccgtctcaaagaggatttgagc
actgagcacatcttgaaatcagggcggaaaatgcaaaggtggatgaagaaacatggtgat
cctttacaaaagcggcgcaatagcgaatttaccaaattttccgaaaaaaatcgactaagt
gatcccaagtataataagatcaatcaagtttgcggcagaagcaagggtgcactacgtttg
atgagagaatgggtaaatactgacgaagaaactaaggaaagttacaagtgctcacgatgc
cctgaccctgtattttcaaaatacaaacaggactctaactatggagttctaacggaaaga
atagaaggcttgataaacgattatatctcaaaaagaaaagtcgaaaactccgcagatata
tccgaagatgaactcagagacctcttatcattcaaagtaatgaagaccctttgccagcca
ggagagcctgtaggattactagcagcgcaatcaattggcgagccgtcaacgcagatgacg
ttgaatactttccattttgcgggacgtggtgaaatgaacgtaaccctcggaattccaaga
ttacgagaaatccttatgatggcctcgaagaatataaagacaccctcaatggaaattccg
tttaggccgaatcttgaaaatatagaaaaacaatcgaacaaattaagattaaagttaacc
agatgcactttgtcaaacgtcttaagaagcattgatgtagacggaagattagaaatcgaa
cctcagagaaggatgacttataagctgacgataaaattcttacctcacaaaagctacaaa
cgagaatactgtgtgaaacgcaagtacgttttacaggcaacggaatatttattcttcaga
gaactgtttaaggaaataaaaaaggcagctcaagtacccggagcattgctgtacactgag
gagaacaaggaaccagcgaacgacgatcaactagacgcagatgaccctgaaagtgcgcct
agcagtcagactaaagggagattagatttcggagaaatgcatgaatcttctgatgaagat
gaagctgccgaagacgcagatgcgaccgcagctaggtcactttctagacaccaagaaaat
caggaatatgacgaccctgacgaaacgagtgatgactccgacgaaaacgaagacgagaaa
atgcgagatgacaaaactgtggcaactgaatcaaacagagctgaagagacagagaagagt
gagttcgaaaatctgcttgcagagaaaaggaaaaaactaattgtcgacatgtacccccat
gctattgagtacgattttgatgacaagaaatatttatcatgcgaattaaggttctggcta
cctttgaaaatgtcaaaactggacttatctacgatcattagatcagtcgcagaaaaggtc
gtactatgggaaacgcctcagataaagcgagcatttacattccaaaatctgaacaatgaa
actgttctgaaaactgatggaatcaacattgtggaaatgttcaagtacaatgaaatccta
gatctcaacagattatactctaatgacatatacgggatttcgcaaacctacggcatcgaa
gcagcgaatagagttatagtaaaggaagtgaaggatgtgtttaaaatgtacggaattact
gttgatccacgacatttacttctgatcgccgactacatgacttttgacggaactttccaa
ccgctaagtcgtaaaggaatggagaactctgcatctcccctccagcaaattagttttgag
agttcactcaccttcctgaaaaatgctacgctccataacaaacgagatgaccttgtttca
ccatccagtcgcttgatcatcggtcaaccttgcaaatccggaacaggatcatttgatttg
atgcatagaatggaaaggtacattctgggtcagtga
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integrated database retrieval system
