Neodiprion lecontei (redheaded pine sawfly): 107217614
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Entry
107217614 CDS
T09006
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nlo03009
]
107217614
03012 Translation factors [BR:
nlo03012
]
107217614
Enzymes [BR:
nlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107217614
5.6.2.5 RNA 5'-3' helicase
107217614
Ribosome biogenesis [BR:
nlo03009
]
Eukaryotic type
Other ribosome biogenesis factors
107217614
Translation factors [BR:
nlo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107217614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
AAA_30
SMUBP-2_HCS1_1B
zf-AN1
ResIII
Viral_helicase1
DEAD
PIF1
Helicase_RecD
SLFN-g3_helicase
Flavi_DEAD
AAA_22
T2SSE
UvrD_C_2
nSTAND3
AAA_18
YqeC
AAA_25
Rad17
AAA_31
AAA_6
DUF4537
Transp_Tc5_C
cobW
AAA
TrwB_AAD_bind
ABC_tran
Piezo_TM25-28
IBR
CbiA
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
107217614
NCBI-ProteinID:
XP_015510692
UniProt:
A0A6J0B920
LinkDB
All DBs
Position
5:31813855..31819144
Genome browser
AA seq
922 aa
AA seq
DB search
MDYVISSFVRKHIDLLRSERDENLQHVFNNISAQALRNLEKEGDALTKLSVGSLASRGLK
QLQIDFVDPNNLPLKHAFAVGDLVACIQSNNRSQFLPGLVSAISQRTISVTISDQTVVNV
NEEEQFAIIKADSDYTYNCQTRALKNLESTEIYSWRCFNVIRILFDNDEKIVQELIDMDN
EISEKYLNEDGQLKFINDKLAEDQRMAVSFALRKKFLAIIQGPPGTGKTTTLVELIGQLR
GLGKKVLVCAPTNVAVDNIAQKLCDAGIKPLRMGHPARIAKEVQSCSIDANVRQDNSYEI
LVQIKQSLKELQEKDGDTEKGGKPWGKIKELSKEYRERMDKLTSEIIRRHPVILCTLNSA
TTGKRAKSMRHVPREYFDVVVVDEASQALEASNWIAIPNAEKVVLAGDINQLPPAVMNQK
AAKNGLCVSLMERAIKKLGKKAYKSLEIQYRMNSKIMSWSSKQFYENTLKADKLVANHLL
RDLPGVESCSLTSDSVVFIDTCGCECEEYQIGSGTISKGNVGEAIVVDRLVAALVKSGVP
EREIGVITPYALQVDFVRKTLSTRSISAEVSTVDGFQGREKEVIVLSLVRSNEEKSLGFV
TDFRRLNVAVTRARRLLVVIVNSETVEDNKLITGLLKHIEDNGLLQTAQEYLEDNSEDLK
KDLEENVKVKQKSVVTNKTDSKTEKRKKPASKNGDKIKGDTNLKSVLKDKGIDLSINANR
KDYNLFECISESNSDIEDTELLPNTAEIATEDPEEMDEALPSVEQVESKPKIELSNLIAS
LKQLETTSTQGTPLASNQPVPMQAKKNKKSKNRKPKTSEITADDDLDKLIATVTANDYIC
AMAGCKKSTQLMHVDCEFCKSRFCFTHGMQEIHGCGEAVRNKERKEFVRRKPENCKKTDK
DKFARKLKQLEEARKPKKKVEK
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggactatgtaatatcgagtttcgtcaggaaacatatagatttattgcgatcggaacgc
gacgagaatctccagcacgttttcaataacatatctgctcaagcccttcgtaacctcgaa
aaggaaggagatgcattgactaaattatccgttgggagtttggctagccgtggtttgaaa
cagctccaaattgacttcgtcgacccgaacaatctccccctgaagcatgcctttgccgtc
ggtgacttggtcgcctgcattcaatcgaataatcgcagccagtttctacctggtctcgtt
tcagccatctcacagagaaccatttcagtcaccatttcagatcaaactgttgtcaatgtc
aatgaggaggaacaattcgccatcatcaaagctgattccgattacacttacaattgccaa
accagagctttgaaaaatctggaatcaacggagatatattcctggcgatgtttcaatgtc
attagaattcttttcgacaatgatgagaagattgttcaggagctaatagatatggacaat
gaaatctctgaaaaatatttgaatgaggatggtcagctgaagtttatcaatgataaactt
gcagaggatcagcgcatggcagtatcatttgctttgcgtaaaaaatttcttgccattatt
caaggaccccctggcacaggaaagactaccactttagttgaattaatcggccaattgcgg
gggttgggtaaaaaggtattggtgtgcgctccaactaatgttgcggtggacaacattgcc
cagaaattatgtgatgctggcataaagccattgagaatgggccatccagctaggatagcc
aaggaggtacagagttgttcaatagatgccaacgtgcggcaagataactcctatgaaatt
ttagttcagataaaacagtcgttaaaagaattgcaagaaaaggacggagacactgagaag
ggtgggaagccatggggtaaaatcaaggaactgagcaaagagtaccgtgaacgaatggac
aagctaacttctgagataatcagacggcatcctgtcattctctgcactctgaactctgca
actactggaaaacgtgctaaaagtatgcggcacgtgcccagagaatatttcgatgttgtt
gtagtggatgaagcttctcaggcgttggaggcctcgaattggattgcgattccaaatgcg
gagaaggttgtgcttgccggcgacattaaccagcttccgcctgctgttatgaaccaaaaa
gcagccaaaaacggactatgtgtgagcctcatggaaagggcgattaaaaaacttggaaag
aaggcttataagagtctcgaaattcagtacagaatgaatagcaaaatcatgtcgtggtct
agcaaacagttttatgaaaatactctcaaggcggacaaactcgttgcaaatcacttactc
agagatttgcctggagtggaatcatgttcgcttacaagtgattcggtagtgtttatcgac
acctgtggatgtgaatgcgaggagtatcaaatcggcagtgggacaatatcgaaaggaaat
gttggtgaagcgatcgtagttgaccgactagtagcggcattggtaaaatctggtgtcccg
gaacgagaaattggtgtaataacgccgtatgctctgcaggtagactttgtacgaaaaacg
ctgtcaactcgttctatatctgctgaagtttctacggttgatggctttcaaggtagagaa
aaggaagtgatcgtactatctttggtccggagtaatgaagaaaaatcactcggctttgtc
actgactttagacgtctaaacgtcgcggttacacgggcaagaagactgcttgtcgtcatc
gtgaacagcgaaactgttgaggataacaaattaattactggtcttttgaagcatattgaa
gataacggtctgttacaaacagcgcaggagtatttggaagataattcggaggacctcaag
aaagacttggaagaaaatgtaaaagtgaaacagaaatctgtggtgaccaataagacggat
agtaagacagaaaagagaaagaaaccagcatcgaaaaatggcgataaaattaaaggtgat
accaatttgaagagtgttctcaaagacaaaggaatcgatttgagtataaacgcaaatagg
aaagattataatctcttcgaatgtattagcgaaagtaattccgacattgaggacacagaa
ttacttccgaacacggcagaaatcgcaacagaggacccagaagaaatggatgaagctttg
ccatccgttgaacaggtggaatcaaaacctaaaattgaattatccaatttgatcgcgagt
ttaaagcagctcgaaacaacttccacgcaaggtacgcctcttgcttcaaaccaacccgtg
cctatgcaagctaagaagaataaaaaatctaaaaatcgtaagccgaaaacttcggaaata
acggcggacgatgatcttgataaattaatagcgacggtgacagccaatgactacatttgc
gcaatggcagggtgcaagaaatcgacccaattaatgcatgttgattgcgaattctgtaaa
tctaggttctgctttacccacgggatgcaagaaattcacggttgtggagaagctgtgaga
aacaaagagaggaaagagtttgttcgtcggaagccagaaaactgtaagaaaacggacaaa
gataaatttgcaagaaagttgaagcagctggaggaggctcgaaaaccgaaaaagaaggtt
gaaaagtag
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