Neodiprion lecontei (redheaded pine sawfly): 107217928
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Entry
107217928 CDS
T09006
Name
(RefSeq) general transcription factor IIH subunit 4 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03022
Basal transcription factors
nlo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107217928
09124 Replication and repair
03420 Nucleotide excision repair
107217928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nlo03021
]
107217928
03400 DNA repair and recombination proteins [BR:
nlo03400
]
107217928
Transcription machinery [BR:
nlo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
107217928
DNA repair and recombination proteins [BR:
nlo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
107217928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
107217928
NCBI-ProteinID:
XP_015511122
UniProt:
A0A6J0BAC3
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Position
5:26471075..26474611
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AA seq
467 aa
AA seq
DB search
MSNTISGKNLLRPTGLQCKDLHEYLKTRPPETLNKLYHNPPICLAVFRELPEIARHYVMR
LLFVEQPVPQAVIASWCSKLHTDEHQKVVKILNELNIWKEASIPGGLPGWILNSTLKKNL
KIVLLGGGKPWTMSNQLETDNKPRDVAFLDTYALERWECVLHYMVGSQQQEGISADAVRI
LLHAGLMKRDEEDGSPVITQAGFQFLLLDTASQVWYFILQYLDTIEARGLDLVVCLTFLF
QLNFSTLGKDYSTEGMSEGLLTFLQHLREFGLVYQRKRKAGRFYPTRLALNIATGQNKPL
SSDLEKEGYIVVETNYRVYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKS
GITAEQIVGYLHQHAHPKMIALGPPTLPPTIVDQIKLWENERNRFIFSEGVLYSQFLSQT
DFEVLRDHALTTQVLIWQSERKRTMVVTKAGHDDVKKFWKRYSKGSS
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacacgataagtggtaagaatttattgcgtccaactgggctgcagtgcaaagat
cttcatgaatatctaaagactcggccgccagaaacgttgaataaactgtatcacaaccct
ccgatttgtctggccgtttttcgggaattgcctgaaatagccaggcattatgttatgcgg
ttgctgttcgttgaacagcccgtacctcaggcagtcatagcttcatggtgttcaaagtta
cataccgatgagcatcagaaggtcgtcaaaattctcaatgagctgaatatctggaaggaa
gcatcaatccccggtggtctacctgggtggattttgaattcaacgttgaagaagaatttg
aaaatagttttacttggtggcggtaaaccttggacgatgtcaaatcagttagaaaccgat
aataaaccacgagacgtcgccttcctagatacgtatgccttggaaaggtgggagtgtgtt
ctccattacatggtcggatctcagcagcaagaaggaatatcggctgatgcggtaagaata
ctgctacatgctggactgatgaaacgtgatgaggaagacggcagcccagtcattacacaa
gcaggatttcagtttctactgctagatacagcgtcccaggtctggtacttcattcttcaa
tacttggacactatagaagccaggggtctggatctggtcgtttgtctaaccttcttgttt
caattgaatttctcgacattgggaaaagattacagtactgaaggtatgtcagagggacta
ttgacatttttgcagcacctcagagaatttggtctggtctatcaaagaaaacgtaaggct
ggaagattttaccctaccaggctagcactaaacattgccacaggtcaaaataagcctctg
tcaagtgacttagagaaggaaggatatatagtcgtggaaaccaattacagagtttacgct
tataccaattctaatttgcaagtcgctctgcttggtctcttttgtgaaatgctttacagg
ttcccaaacttggttgtatccattttaacaagagattcagtgaggcaagctctgaagagc
ggcattacagctgaacaaatcgttggatacctacatcagcatgcccatcctaagatgatt
gccttaggaccaccaactttgccccctaccatagtggatcaaatcaagttgtgggaaaac
gaaagaaatagatttatatttagcgagggcgttctgtatagtcagtttctttcacagact
gactttgaagtactcagagatcacgcgctcaccacccaagttctaatctggcaaagcgaa
agaaagcggactatggttgtcacaaaagcgggtcatgatgacgtcaaaaagttttggaag
cgttattcgaaaggaagcagttga
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