Neodiprion lecontei (redheaded pine sawfly): 107219065
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Entry
107219065 CDS
T09006
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
107219065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nlo03400
]
107219065
DNA repair and recombination proteins [BR:
nlo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
107219065
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
107219065
NCBI-ProteinID:
XP_015512621
UniProt:
A0A6J0BE17
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Position
7:complement(19446634..19461438)
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AA seq
922 aa
AA seq
DB search
MAVQPNQQFNMDNATQQSFVRFFKNLPEKPSSTIRFFNRTEYYTLHGSDALFAAKEIYKS
TAGCKMLGAEPYKTEGLILSKSNFENFVRDLLLVKQYRVEVFVNQGSGKNQDWILEYKGS
PGNLVQFEDILFSNNDVAVSTSVMAVKLGGEAKNRIVGVSCVDSVERLISVCEFADDDLF
SNLEALVISLGPKECLIIQGDGSQEFQTLKQLMERSNIMVTLRKKSDFSTDSIVQDMNTL
LNFRKGQQRNAQTLVEMNLKVAMAGTSAIIKYLELTSDEGNFNQFKVKQLEQSRFVRLDA
AAVRALSIEPRGDLPSGTSTGAPNSILNLLDRCRTPQGHRLISQWIRQPLRDIALIKERH
DIVETLVKDNELRSSLMEDHLRRVPDLQQLAKKLAKKKVTLQDCCRIYFCVSHLPVLTEQ
LCNAKYGAAMKAMIVDPLRELISDMDKYQQMIEQTIDLEAAEKGDYMVKPEFNNDLQELK
LKMNDLEEEIQGLINKVATDLSLEAGKVLKLESNQQFGYYFRITLKEEKSIRNKKGYTTI
DSNKSGVRFTNQKLTSLNEDFISVRDQYLEEQKSVISEIINIAAGYTGPVHSIGSVTAQL
DVLTAFALASANAPRAYVRPEMCSSDVGELNLIQARHPCLELQEGVDFIANDVSFKRDEC
TFHIITGPNMGGKSTYIRTTGVVALLAHIGCFVPCDSAKISILDCILARVGADDSQTKGL
STFMTEMIETAAILRTATSNSLVIIDELGRGTSTYEGCGIAWSIADHLATELKPYCLFAT
HFHEITRLAEDVPTVKNLQVTAVVGDNKLTLLYRVKPGVCDQSFGIHVAKMANFPDHVVE
AAEKKLIELEDCQKITFEGSDDPAARRKIIKAGDELIAIFAAKCKALDPSLTKPEIENKI
QLYKEEILSHNNPYINALLSSP
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggctgttcaaccaaatcaacagttcaacatggacaatgcgacgcaacagagctttgtc
agattctttaaaaatcttcctgaaaaaccatctagtacgatacgatttttcaacaggaca
gaatactacacgctacatggaagcgatgccttgttcgcggctaaggagatctacaaaagt
acagctggctgcaagatgctcggtgctgagccatacaaaacggaaggattgatcctaagc
aagtccaactttgaaaattttgttcgtgatttgttgctggtcaaacagtacagagtggaa
gtgtttgttaatcaaggatcaggaaagaatcaggattggattctagaatacaaaggatct
ccgggaaatttagttcaatttgaggatattctgttcagcaataatgatgtcgcagtcagt
acctcggttatggctgtgaaacttggtggtgaggcaaaaaacaggatagtcggagtgagt
tgcgtagattcagttgagcgtttaatttctgtttgcgaatttgccgacgacgatttgttc
tcaaacctagaagcgcttgtgatttcccttggaccaaaagaatgcttaataattcaaggg
gatggcagtcaagagtttcaaactttgaaacagttaatggaacgaagtaacatcatggtc
acgctaagaaagaagagtgatttttcaacggattcaattgttcaagacatgaacacgctt
ctgaacttcaggaaaggccagcaaagaaatgcccagacacttgtggaaatgaatttaaaa
gtggctatggcgggaacatcagcgattatcaaatatcttgagttgacatcggacgaagga
aatttcaatcagttcaaggtaaaacaattggaacagtctagattcgtcagattagatgca
gcagcagtgagagcgctgagcatcgaaccacgcggcgatcttccttctgggacaagtaca
ggcgctccgaatagcatactgaatctcttggatcgatgcagaaccccacaaggacacaga
ttgatatctcagtggattagacaaccgctgcgagacattgcgttgatcaaagaacgacat
gacattgttgaaactttggtaaaagacaacgaattgaggtcctctctgatggaagatcat
ctgagacgcgtacccgatcttcagcagcttgcaaaaaagttagccaaaaagaaagtcact
ctacaggattgttgcagaatttacttttgtgtctcgcacttgccagtactcactgagcaa
ttgtgtaatgcaaaatatggcgcggcgatgaaggcaatgatagtagatccactcagagag
cttatttctgatatggataagtatcaacaaatgatagaacaaactattgatttggaagct
gcagagaagggtgattacatggtgaaaccagaatttaataacgatttgcaagagcttaag
ctgaaaatgaatgatttggaggaagaaatacaaggcctgatcaacaaagttgccacagac
ttgtctcttgaagctggaaaagttctcaaactggaatcgaatcaacagtttggatattat
tttcgaataacgttgaaagaagaaaagtctatcaggaacaagaaaggctacacaactata
gattcaaacaaaagcggcgtgaggtttacaaaccagaaactgacgtctcttaatgaagac
ttcataagcgtcagggatcagtatttggaagaacaaaaatctgtcatttcagaaatcatc
aacatcgcagctggatacactggaccagttcattccatcggttctgtgacagctcagctc
gacgtacttacagcttttgcattagcttcagctaacgctccgagagcttatgttagacca
gaaatgtgttccagtgatgttggcgagttaaatctcattcaggcaagacatccttgccta
gaacttcaggaaggggtggatttcatcgcaaacgatgtcagcttcaaaagagacgaatgc
acctttcacataataactgggccaaatatgggcggaaaaagtacgtacattcgaacaaca
ggagttgtcgctctgctagctcacattggctgttttgtgccttgtgatagtgcaaaaatt
tcaatacttgattgtattttggcgagagtcggagccgatgattctcaaactaaaggactt
tctaccttcatgactgagatgattgaaacagcggctattttaaggactgcaacgtctaat
tctcttgtcataatcgacgaacttggtagaggaacttccacgtatgagggttgcggaata
gcttggtctatagccgatcatttggccacagaactcaaaccttactgtctcttcgctact
catttccatgaaataacgaggctagcagaagatgtaccaacagtaaagaatctccaagta
actgcagttgtcggagacaacaagctcactttactgtatcgcgttaaaccaggtgtttgc
gaccaaagtttcggaatacacgttgctaaaatggcaaactttccagaccatgttgtggag
gccgctgaaaaaaaactgattgaattggaagattgtcaaaaaataacttttgaaggctcg
gatgatccagcagctagaagaaaaattataaaagctggagacgagctgatcgcaattttt
gcagccaaatgcaaagcactcgatccatcattaacgaagccagaaattgaaaacaaaatt
cagttatacaaagaagagattctttctcacaacaatccttatataaatgcactgttgtcg
agtccgtga
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