Neodiprion lecontei (redheaded pine sawfly): 107219775
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Entry
107219775 CDS
T09006
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
107219775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nlo03400
]
107219775
DNA repair and recombination proteins [BR:
nlo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
107219775
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
ARM_CUL7_CUL9
OVT1
AAA_22
Motif
Other DBs
NCBI-GeneID:
107219775
NCBI-ProteinID:
XP_046592609
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Position
4:34277849..34285094
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AA seq
1144 aa
AA seq
DB search
MPKVNTLFNYFTSPKTDKRLVKETSSPQRESPKSNGDQKGRGARGLKAGKENSNKENKRG
TPTSRHQIKSSSVATRKRSSNKETEADETSRPKRRRLIIPSDNSDDSGDDYKPTEDDASS
SEFSASEADSESEALSSGVESDEETPKKKRNIEPKSAAPKKNSRGKTQVKSELKNSDPPS
QTTGNSSVNTQGWSHLKYDFLQTNKIKDIHQRPPSDPNYDPRTLYVPHYFKINQTPAMKQ
WWEMKCKNFDCVIFFKVGKFYELYHMDAVTGVNELGLSYMRGEFAHSGFPEIAYSRFASS
LIEKGYKVARVEQTENPEMMSARVSKMSQVTKFDKVVKREICQISSKGTRVFTAQDSETS
TASSTYLLSIVEKFNPSTPTSIYGVCFIDTSIGGFHLGQFEDDRHSSRLLTLVSHFPPSQ
VIYERGGISERTNKILNTMLATALKEPLQRETQFWSAATTLKKLHEGEYFKSEFNSDFTW
PEGLKPYLSDGDSLGLTAADNMELAISALGGCVFHLKECFIDQQLLAQGRFESWIPPDHE
DRQSSGKFANNMVLDAITINNLRILGGPGSLISMLDHCCTPFGKRLLREWICRPSCRKSE
IMQRQQAVTELIDKIEIMQNVRGSLAPLPDLERLLSKIHAQGNFAKGQSHPDARAIMYES
KTYSKRRILDFTNALHGFEEASKIIDSIGDVKCDLLKRCIKHNPEGDFPELEEMLNYFKS
AFNQEEAKKEGCIIPKPGVDSEYDAVLEEVSEIKRDLEKYLEQQRKHFGVKVNYFGTEKK
RFQIEVPDSQLRKVTTVYELQSQRKGFRRYYTAEAKELLERQIAAETNKDKVLKDISRRI
FAKFSEKYDVWCSAVYQLATLDVLTAFAEYSQSAEMSVPIIEDLMSEKSAFIDIRDGRHP
CVTSDDFIPNDTLLGTEDSASLVILTGPNMGGKSTVMRQVGLLTIMAQIGCHIPASSCRL
TLVDRIFTRLGANDDILTGQSTFFVELSETATILQHATPNSLVLVDELGRGTSTYDGTAI
AASVVGALKERKCRTLFSTHYHALVEDYKLDKNVSLSHMACMVETEEEEEVSQETVTFLY
KLSKGACPKSYGFNAARLAGISSKITLKAHEIASKLENEVNQRHFLVALFKGKSDLKTLL
AALK
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaggttaatacgctattcaattactttacgtcacccaaaacggacaagcgactc
gtcaaagaaacgtcgagtccccaacgagaatctcccaaatcgaatggcgatcaaaaagga
agaggtgcgcgtggtctaaaagcaggtaaagaaaattcaaataaagaaaacaaaagagga
actccgactagcaggcaccaaatcaaatcctcaagtgtggcaaccagaaaaagatcttcg
aacaaggagacagaagcagatgagaccagccggccaaagagaagacgattgataatacca
tctgacaacagtgatgattcaggagacgactacaagcctactgaagacgatgctagttct
tccgaattttctgcctcagaagctgatagtgagtctgaagctttatcttctggcgttgaa
agtgatgaagaaactcccaagaaaaaaaggaatattgaaccaaaaagcgctgcgccgaaa
aaaaacagtcgtggaaaaacccaggtgaaatctgaactgaaaaattctgatccccccagt
cagacaactggtaacagttcagttaatacacaaggttggagtcatttgaaatacgacttc
cttcagacgaataaaatcaaagatatacaccaaaggcctccaagcgatccaaactatgat
ccaagaactctttatgtgccacattatttcaaaatcaatcagactcctgctatgaaacag
tggtgggaaatgaaatgtaagaattttgactgtgtaatcttttttaaagttgggaaattt
tatgagttgtatcatatggatgcagttactggtgttaacgaacttggcctatcatatatg
cgtggggaatttgcacattccggctttccagaaatagcatatagtcgatttgcatcaagc
ttgatagagaagggatacaaagtagctagagttgaacaaaccgagaatccagagatgatg
tcagccagagtcagtaagatgtctcaagttacgaagtttgacaaagttgtaaaaagagag
atatgtcaaattagcagtaaaggtacgagagtattcactgcacaggatagcgaaacctct
actgcaagttcaacttacttgctctcaatagtagaaaaatttaatccatcaacacccacg
tcaatttatggtgtctgctttatcgatacttcaattggtggttttcatcttggacaattt
gaagatgatcgtcatagttcgaggctgttgacgctagtttcccattttcctccgtcacag
gttatttatgaacgtggtggtatatcagagagaacgaataaaatattgaataccatgctg
gctactgcactcaaggagccactgcaacgggagacgcaattttggtctgctgctactacc
ctcaaaaaactacacgaaggagaatatttcaaatcagagtttaattctgattttacctgg
ccagaaggtttgaagccatatttaagtgatggagacagtttaggactcactgctgctgat
aatatggagctagccatatctgcattggggggatgtgtatttcatctaaaagaatgtttc
atagatcagcaattacttgcccaaggacgtttcgaatcttggatccctcctgatcatgag
gatcggcagagttcaggaaaatttgccaacaatatggtactggatgccattacaataaat
aatctgagaatccttggagggcctggttcgctcatatcaatgttggatcattgctgcacc
ccgtttggtaaacgattgttacgcgaatggatttgccgaccatcttgccgcaaatctgaa
ataatgcaacggcagcaagcagttaccgagctaattgataaaattgaaattatgcaaaat
gttcgcggctcattagctcccctcccagaccttgagagattactgagcaaaatacatgct
caaggtaattttgcaaagggacaaagtcatccggatgcaagagctatcatgtatgaaagt
aaaacgtattctaaacgaagaatcctggactttacaaacgcgcttcatggatttgaggaa
gcttcaaaaattatagattcaatcggtgacgtaaaatgcgatctactaaaacggtgcatt
aagcacaatcctgagggtgactttcctgaattggaagagatgctaaattacttcaagagt
gcttttaatcaagaagaagcaaagaaagaaggatgtattatacctaaacctggagtcgac
tcagagtatgatgcagtactcgaagaagtgtctgaaataaaacgagatctagaaaaatac
ttggaacaacagagaaaacattttggagtaaaggtgaattacttcggtactgagaaaaaa
cgttttcaaattgaagttcccgattcccaattgaggaaagttaccacagtttatgaactt
cagtcacagcgcaaaggtttcagacgctattacaccgctgaagccaaagagcttttggaa
agacagattgccgcagaaactaacaaagacaaagtgctaaaagatataagcagaaggata
tttgctaaatttagcgaaaaatacgatgtatggtgttcggctgtctaccaattggctaca
ctagacgtcctcactgcatttgctgaatattcccaaagcgccgagatgtctgtccctata
atagaagatcttatgagtgaaaaaagtgcttttattgacataagagatgggaggcatccg
tgtgttacatctgacgactttataccaaatgacactttattgggaacagaagattccgcg
tcacttgtcattctaactgggcctaatatgggaggaaagtcaactgtaatgcgtcaagtt
ggtctccttacaatcatggcccaaattggttgtcatattcccgcaagttcatgccgattg
acattagtcgatcgtattttcactcgtttgggtgccaatgatgatatattaactgggcaa
agtactttctttgtggagttgagcgaaactgcaactatacttcagcacgcaacaccaaac
tcactggttctggtggatgaattaggacgaggcacctcaacttacgacggaacagcaatt
gcagcttcggttgtcggcgctctgaaggaacggaagtgtcgcaccctattttcaactcac
tatcatgctttggtagaagactataaattggacaagaacgttagcttgagccacatggcg
tgtatggtagaaactgaggaggaagaagaggtttcacaggaaacagtaacgtttttgtac
aaactgagcaaaggtgcatgtccaaagtcttacggtttcaatgcagctcgtttggctgga
atttcatcaaaaatcactctaaaagctcatgagatagccagcaagttggaaaatgaagtc
aaccagaggcacttccttgttgctctatttaagggcaaaagtgacctaaaaacccttctt
gcagctttaaagtaa
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