Neodiprion lecontei (redheaded pine sawfly): 107220860
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Entry
107220860 CDS
T09006
Name
(RefSeq) exosome complex exonuclease RRP44
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107220860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nlo03019
]
107220860
Messenger RNA biogenesis [BR:
nlo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
107220860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
CSD2
Rrp44_S1
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
107220860
NCBI-ProteinID:
XP_015515110
UniProt:
A0A6J0BKB8
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Position
7:26349909..26356760
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AA seq
979 aa
AA seq
DB search
MLTTKTFFRKTKRGNILKIVREHYLRDDIWCGSNLCSICKHKSKDLVLDEDPESRSSLYP
QGHYLVLDTNVVLDQIDVLEEDALCNVIILQTVLEEVRHRSSNVYKKLRDIIGDPKRKFY
VFVNEHHKDTYIEREPRENVNDRNDRAIRVAAAWYQNHVNASKGARKEKQKVDVVLLTDD
AANRDKAIGEGINAASMQDYVASLIDAGFLQDKLCKRNYVLEGESKTPLFPPHLTPAQIH
DGIKSRKLLQGTFLASRENFLEGSVNVEGYEKFILLQGKLALNRAVDGDIVAIELLPEDQ
WSVPSDLVIQDEEEDPSDLLEDETELKAIKVPKNIQRTPTGVVVGIIRRKWRQYCGILQP
SLVKGNVRHMFVPAERKIPRVRIETRQSENLSKQRIIVAIDSWPRNSRYPLGHFVRALGN
IGDKETENEVLLLEHDIPHNRFSDAVLSFLPKLPWLITEADVTQRVDLRHIDVCSVDPPG
CTDIDDALHCRELENGNLEVGVHIADVSHFIRPGTALDKEAASRGTTVYLVDKRIDMVPE
LLSSNLCSLRGNEERFAFSCVWEMDEKANIIDTKFHKSIIRSRQAMTYEEAQLKIDDETQ
QDSIAKSLRGLNSLAKKLKAKRFENGALVLASPEIRFEVDSETHDPIDVQAKKLRETNSM
VEEFMLLANTSVAKKIVQDFPECSMLRRHPEPPQANFDPLVKAGRNRGFVINTASGKELA
TSLNEAHTEDNPYFNTMLRILATRCMMQAVYFTSGMLQPEEYFHYGLACPIYTHFTSPIR
RYADIMVHRLLAVCIGADATYPNLLDKKKNHELCYNLNYRNRMAQYAGRASVALNTHLFF
REKVQNEEGYVLFVRKNALQILIPKYGLEGTLYLSKKGEVSPVNFIYDEEDQSQKFEHIV
FHSFDPVVVQLSLDRSNVQHEKLVFKLVKPVIPGFSIPTKSDPEMVPKSNIVPKRKTEEK
PTGSEISGGKRGRRKKQKK
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgttgactacgaaaacatttttcagaaaaacaaagaggggaaatattctcaagattgtc
agagagcattacctcagggatgatatatggtgtgggtcaaatctgtgctcaatatgtaaa
cacaaaagcaaggatttagtccttgatgaagaccctgagtcgagaagttctttataccct
cagggacactatcttgttctggataccaacgtagttctcgaccagattgatgttctcgaa
gaagatgctctatgcaacgtcataattttgcaaactgtgcttgaagaggtacggcacaga
agttccaatgtgtacaaaaaactgagagacattattggcgatcctaagcgaaagttttac
gtcttcgttaatgagcatcataaggatacctatattgaacgagaaccacgtgagaacgta
aatgatcgcaatgatagagctatcagagtcgctgcagcttggtaccagaatcacgtgaat
gcgagcaaaggtgctcgtaaagagaagcaaaaggttgacgttgttttgcttacagacgat
gccgcgaatcgagataaagcgatcggtgaaggcatcaatgctgcgtcgatgcaagattat
gttgcatcgttaattgacgctgggttcttacaagacaagctgtgtaagcggaactatgtt
ctcgaaggagaaagcaagacaccgctgtttccaccacacttgacgcctgctcaaattcac
gacggtataaagagcaggaaattgctacaaggaacgttccttgcttcaagggagaatttt
ttggaaggaagtgtaaatgtcgaaggatacgaaaaatttatattgttgcaaggaaaactc
gcactgaatagagcagtcgacggggatatcgtcgctatagagctactgcccgaagatcag
tggagtgtaccctcggatttagttattcaagacgaagaagaagatcctagtgatttgctg
gaagatgaaaccgagttgaaggctataaaagttccgaaaaacattcagagaacgcctacc
ggggttgtagtaggcataattagacggaaatggcgacaatactgcggtattctgcagccc
agtcttgtgaaagggaacgtgaggcacatgttcgttccggcagagcgaaaaatcccgcga
gtaaggatcgaaactcgtcaatctgagaatctgagcaagcagcggatcatagtcgcgata
gactcttggccccgcaactctagataccctttgggccactttgtcagagcacttggtaac
attggcgacaaagaaacagagaacgaagtcctcctccttgagcacgacattcctcacaac
agattctcagacgcggttctcagttttcttccaaaattaccctggctgataaccgaggcg
gacgttacccaacgcgtcgatctgcggcacatagacgtttgctcggtcgacccaccgggt
tgtacggacatcgacgatgccctgcattgtcgggaattggaaaatgggaaccttgaggtc
ggggtccacatcgcggacgtttctcacttcattcgtcctggaaccgcgctggacaaggaa
gccgcgtcacgtggcaccaccgtctacctcgtcgacaagaggatcgacatggttccggaa
ctactcagctcgaatctctgctctcttcgtggtaacgaggagagattcgcgttttcgtgc
gtatgggaaatggacgaaaaggctaatataatagacacgaaatttcacaagagtattatc
cgatctcgacaagccatgacttacgaggaggctcagctcaagattgacgacgaaacgcag
caagattccattgccaagtcgctgaggggcctgaatagtttggctaaaaaattgaaggcg
aaacgttttgagaacggagcgttggttttggcctcaccggaaatccggtttgaggtagac
agcgagacccacgaccccatagacgttcaggcgaagaagcttagggagactaactcgatg
gtcgaagaatttatgttgcttgccaatacttccgtggcaaaaaaaattgttcaagatttt
ccggagtgctcaatgctcagacgacatccggagccgcctcaggcaaactttgatccactc
gtgaaggctggaaggaaccggggcttcgtcataaatactgcgtccggcaaggagctcgca
acttctttgaacgaggctcacaccgaggataacccgtatttcaatacgatgctcaggata
ctggcgactcggtgcatgatgcaggctgtttatttcaccagcggaatgttgcagcctgaa
gaatactttcattatggtcttgcgtgtccgatttacacgcatttcacatcgccaataaga
aggtacgcagatattatggttcaccgtctcctcgccgtgtgcataggtgccgatgcgacc
tatcccaacttacttgacaagaagaagaaccacgagctgtgttacaacttgaactacaga
aacagaatggcccagtacgccggcagagcctcagtcgccctgaatacgcacttgtttttc
agagagaaagtacagaacgaggagggttacgtgttatttgtaaggaaaaacgcccttcag
attctcataccgaaatacggactggagggaactttatatcttagtaaaaaaggcgaagtt
tcacctgtaaatttcatttatgacgaggaagaccagagccagaaattcgaacacattgtt
ttccattccttcgatccagtcgtggtccagctgagccttgaccggtcaaacgttcagcac
gagaagcttgtgttcaagcttgtgaagccagttatccccggattcagtattccgacgaaa
tccgatccggaaatggttccgaaatcgaatatcgtgcccaaacgtaagacggaagaaaaa
ccgacgggctcggaaatttcgggcggaaaaaggggtaggagaaagaagcagaaaaagtga
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