Neodiprion lecontei (redheaded pine sawfly): 107221552
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Entry
107221552 CDS
T09006
Name
(RefSeq) uncharacterized protein LOC107221552 isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107221552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nlo03019
]
107221552
Messenger RNA biogenesis [BR:
nlo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107221552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
eIF2A
NBCH_WD40
WDR54
Motif
Other DBs
NCBI-GeneID:
107221552
NCBI-ProteinID:
XP_015516065
EnsemblRapid:
ENSNLCG00000010124
UniProt:
A0A6J0BNA5
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All DBs
Position
4:complement(39482350..39492187)
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AA seq
1085 aa
AA seq
DB search
MSVNAQFANPPPVISLPNMSVPPPIATPNLSAPPPNLTTINTTTGGYQHRFGTHRDGNRG
FFKPFRPYHAPKVIAGGQDALQDEFDGKRLRKSVMRKTVDYNAAIIKTLENRVWQRDYRD
RRALQPDVIYYPDLLPPPSYVDNPINAVTTKFVKTATNKMRCPIFCMAWTPEGRRLVTGA
SSGEFTLWNGLTFNFETILQAHDSPVRTMVWSHNESWMVTGDHAGYVKYWQSNMNNVKMF
QAHKEAIRGLSFSPTDHKLATCSDDGTVRIWDFLRCHEERILRGHGADVKCVHWHPQKSL
VISGSKDNQQPVKLWDPKTGQSLATLHAHKSTVMDVKWNENGNWLVTASRDHLLKLFDLR
NLSQEVQTFRGHKKEASSVAWHPSHEGLFCSGGSDGAILFWHVGADKEVGAIEQAHDSIV
WTLAWHPLGHILCSGSNDHTSKFWTRNRPGDLMRDKYNLNTLPAGAAGVDDHEVADDSPV
IPGMGPEDRINADGESEDKSGGIPGLDLDHAIDEGKKYANKKVPYSKPIPRNFQAQWNEM
EAEDIEQVEALNAFVNQLIETTPGAVPLNEVTPNAIILYGKMIPVEPESKLAEAITKGND
AINKLVFSGEIEELREVIGSPEDVEESEDFLQDEGEIDYSKVPDIELPAPLPSSKFAQNP
ELLKTLNRGGKRKFDQLIGWSDGGASDRTSKIHQPVFGASLNDDLSSDTESRSGMANNSG
CESNSFGMGLDEDLRHLPSDMRSMGRDEDLRFGGMGGGLGRSMMGSDKDLRSSSMNFGDK
DFRQMSMHNFGMGKSNMDNDMFGDRDRESRDRSRWDDEQGGRNLNDNFNMDFPGNNNFDK
RDNMPPNMGNNHNMPHMGNMGNHHNMQNINPNMSHHMSNMGPHPNMPPHMGMPNKNNPNM
SSHQGMQNIDNPMPHMNNSNMPNMMHHPNMSNMPPGFGPNGMPPGNFGPNFRPPNGNFGG
NQHFRPNPMAPFAPNSGPPFNNSFMQNQGPPNMRGPNAGNQGPPNFDRQGFGGPNFRGPN
PGNQGQGGYGGYGGPNKNGPMHNMQGRSRGSNENNIGRGAYGNRGRGRDNDQPPRGGNSR
SRDNF
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtcaatgctcaattcgccaatccacccccggtgataagtttaccaaacatgtcg
gttccaccacccattgcaacgccgaatttatctgcacctcctcctaatttaacaactata
aatactacgactggaggttatcagcacagatttggtactcacagagatggaaatcgtggt
tttttcaaaccatttcgaccttatcatgccccgaaagttatagctggtggtcaagatgcg
ttacaagatgaattcgatggaaagagactcaggaaatctgtgatgcgaaagacggtcgac
tataatgctgctattattaaaaccttggagaatcgggtttggcagcgagactacagagac
agaagagctcttcagcctgacgttatatattatcctgaccttctgccaccaccaagctac
gttgataatccaatcaacgcagtgacaacaaaatttgtcaaaacagcaacgaataaaatg
aggtgtccaatattttgcatggcttggacccccgaaggaagaaggcttgtcactggtgca
tcgagtggcgaattcacattatggaatgggcttacttttaactttgagactattctacag
gctcatgacagccctgtacgtacaatggtttggtcccacaacgaaagctggatggtgacg
ggcgaccacgcaggctacgttaagtactggcagagcaacatgaacaacgtcaagatgttt
caggcgcacaaagaggctattagaggactcagtttcagtcctacggatcacaagctggcc
acttgcagtgatgacggaaccgtcagaatctgggactttctgcgatgtcacgaggaacga
attctcaggggtcacggagcggatgtaaagtgcgttcattggcatccgcagaagagtctc
gttatatctggaagtaaagataatcagcagccagtgaagttgtgggacccgaaaactggg
caatcgctagctactctacacgcgcacaaatcaacggtgatggatgtgaagtggaatgag
aatggaaactggttggtcacagcatctcgagatcatttactcaaactgtttgatctgcga
aatcttagtcaagaagtgcaaacctttaggggtcataaaaaagaagcttcaagtgttgct
tggcatcctagtcatgaaggacttttctgtagcggtggtagcgacggggccatactcttt
tggcacgttggcgctgacaaagaagttggagcgatagagcaagcgcacgacagtatagta
tggaccttggcgtggcatccgcttggacacatattatgttctggaagcaacgatcacaca
tcaaagttctggacgagaaatagaccaggagatttgatgagagataaatacaacctgaac
actctgcctgcaggagctgcaggtgttgatgatcatgaagttgctgacgactcgccagtc
ataccgggtatgggacctgaagatagaattaatgctgacggtgaatccgaagataaaagc
ggcggaatcccaggtcttgacttagatcatgcgattgacgagggaaagaaatatgccaat
aagaaagttccttatagtaaaccaatacccagaaatttccaagcgcagtggaatgagatg
gaagctgaagatatcgaacaagtcgaggcattgaatgccttcgtcaatcagttaatcgaa
acgacacctggggctgtacctttgaacgaagttacacccaacgctataattttatatggg
aaaatgattccggttgagccagaatcaaaattagctgaggctattaccaaaggaaacgat
gccataaacaaattagtattttccggagagatagaggagcttcgcgaagtgatcggttct
cctgaagatgtggaagaatccgaagatttcttacaagatgaaggtgaaattgattactcc
aaagttcctgacatcgaacttcctgcgccgttgcccagttccaaatttgcgcagaatcca
gaattactgaaaacattaaaccgtggtggaaagagaaagtttgatcagttaattggttgg
agtgacggcggtgccagcgaccgaacgtctaaaatacatcaacctgtctttggggcttca
ctgaacgatgacttgtctagtgacacagaatcgagatctggaatggctaacaattccggc
tgtgaaagtaactctttcggaatgggtctagacgaagacttgagacacttgccaagtgac
atgcgaagcatgggtagagatgaagatttacgattcggtggtatgggtggtgggttgggc
aggtcgatgatgggtagcgacaaggacttaagaagcagttcgatgaactttggcgataaa
gatttcaggcaaatgtccatgcacaatttcggaatgggaaaatcaaacatggacaatgat
atgtttggggatagggacagagaaagtagagacagatcaagatgggacgacgagcagggt
ggtagaaatcttaacgacaacttcaacatggatttccctgggaataacaattttgacaag
cgagacaacatgccgccaaacatgggaaacaatcacaacatgccgcacatgggcaacatg
ggtaaccatcataacatgcaaaatatcaatccgaacatgagtcatcacatgtcgaatatg
ggaccccatccgaacatgccgccacacatgggtatgccaaataaaaataatccaaatatg
tcctcgcatcaaggaatgcagaatattgataatccaatgccacatatgaataactctaac
atgccaaacatgatgcatcaccccaacatgtctaatatgccacctgggtttgggccaaat
ggaatgcctccaggcaattttggtcccaatttcagacctcccaatggaaactttgggggt
aatcaacacttcagacccaatcctatggcgcccttcgcgccaaattctgggccacccttc
aacaactcgtttatgcaaaatcaaggcccaccaaatatgcgtggtcccaatgccgggaac
caaggaccaccaaactttgatcgccaaggtttcggtggcccaaatttccgtggcccgaac
cctggcaatcagggacaaggcggatatggtggatacggtgggccaaacaaaaacggacct
atgcacaacatgcaaggaagatccagaggctctaatgaaaacaatatcggacgtggtgct
tacgggaatagaggcaggggtagagacaatgatcaaccacccaggggtggcaattctaga
agcagagacaatttttga
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