Neodiprion lecontei (redheaded pine sawfly): 107222073
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Entry
107222073 CDS
T09006
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nlo03021
]
107222073
03036 Chromosome and associated proteins [BR:
nlo03036
]
107222073
Transcription machinery [BR:
nlo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
107222073
Chromosome and associated proteins [BR:
nlo03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
107222073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
SPT6_acidic
S1
SH2
HHH_9
HHH_3
Tex_YqgF
Tex_central_region
Spt6_S1
OB_RRP5_4th
HTH_10
S1_RRP5
Tex_N
Motif
Other DBs
NCBI-GeneID:
107222073
NCBI-ProteinID:
XP_015516772
UniProt:
A0A6J0BR51
LinkDB
All DBs
Position
4:2831075..2840117
Genome browser
AA seq
1766 aa
AA seq
DB search
MADFIDSEAEESEEEEELDHNEKKKLKKIKAVEESDEDDEDDEDRFQGELEDLIDDNPIE
ESEGEDSDGSGGSKKRKKSDDEDFDDRLEDEDYDLIEENLGVKVERKRFKRLRRIQDEES
EEEQEHEAVEERDAIANELFEGSGDEDERRSERSHRPEPETFDEEGSDGDYSEGDDFIVD
DDGRPIAERRRKKKPIFSDAALQEAQDIFGVDFDYDEFGKYGEEDYEEEEEEDEEDEYVD
EDGDGERPRRPKKQPKKKTTRKSIFEIYEPSELKRGHFTDMDNEIRNTDIPERMQLRSVP
VVAVPEGSDELDLEAEWIYKQAFCRPSVSVQDSHLNAEAKERARKGPQTVGKIKKALDFM
RNQHFEVPFISFYRKEYVLPELNINDLWKVYKFDVKWCQLRQRKENLLQLFEKMRNYQLD
EIMKNAEAPLPEGLRLIKDDDIERLRNVQTSEELNDVHHHFMLYYSHEIPPMQEAVRKKE
REARAAARAAKRRQQIADAEENGEDPPPEDDVEADEEEEPDETLKQAVRTGPYTICRKAG
LDGLAKKFGLSPEHYAENLRDNYQRHEVDQEPTEPSVVANDFCGKKFKTPEEALKATQLM
VAIQLAREPLVRKCVREMYMERAKLSVTPTKKGIKEIDENHSIYTMKYLKDKPVRDLVGD
QFLKLSIAEEDKLITISISDSIEGNTSNNYVDEMKQLYYRDEFSKNVQDWNALRVGSVEM
ALTKMVIPELKKELKANLIAEAKECVMRACCRKMYNWLKVAPYSCDFPEEEDEEWDTSKG
LRVMAVSYVPDYSKAAFTCLVAPDGECTDYLRLPHLMKKKNSFREDEKAMKEADLLAIRN
FIATKKPHVVVVSGTSREATMVVADIKECISNLVEEEQFPNIQIEVCDNELAQIYSNSNK
GVSEFRDYPELLREAISMARRMQDPLVEFSQLCTADEEILCLKYHPLQDQLPKEDLLENL
YLEFVNRVNEVGVDVNKAVQQAYAGNLVQFVCGLGPRKGQALIKMLKQTNQRLENRTQLV
TACHMGPKVFINCAGFIKIDTNSLGDSTEAYVEVLDGSRVHPETYEWARKMAVDALEYDD
EDANPAGALEEILESPERLKDLDLDAFAEELERQGFGNKCITLYDIRAELNSRYKDLRVP
YQSLSAEKLFDVLTKETPETFYIGKMVEATVCGITHRKPQGEQLDQANPVRNDETGLWQC
PFCLKNDFPELSEVWNHFDAGACPGKATGVRLRLENNISGYIHIKNLSDKHVANPEERVR
IGQIIHCRIIKIEVDRFSVECTSKSSDLADKNHEWRPQRDPFYDMEAEQKDQQVEEDAKK
AKQRQTYIKRVIVHPAFHNISFAEAEKFMQNMDQGEAIVRPSSKGADHLTVTWKVTDKIC
QHIDVREEGKENTFSLGQSLWIGNEEFEDLDEIIARHVNPMAAHARDLLYFKYYKDTEGG
LKDKAEELLKDEKKKNPGKIHYFISAAKNYPGKFVLSYLPRVRCRHEYVTVTPEGFRFRG
QMFDNVNSLFRWFKEHFRDPVPGQGTPSTPRGAMTSRTPYHNTPGVNMSSMNQEAIQRVA
QNLPHHMLHSLSQVANQTPHHYPPHTPGAASAGPYGGMHTYPNTPYTPSGQTPFMTPYQT
PHHTPHHGQPTPRYGQQTPNHHQGQFVHPGPTTVTSAHHRTTPSHRPTPQMPTLAGDPMD
WKKAAEAWAKLKQITPRISGNSTPRYEDSRKTPRGYDDGSGRATPRNRPPTARTPSYKSP
RGTPHTNSSPRSMSLSGDGTPLYDEN
NT seq
5301 nt
NT seq
+upstream
nt +downstream
nt
atggcagacttcatcgactcggaggcggaagaaagtgaggaggaagaggagttagatcac
aatgaaaagaaaaaactaaagaaaattaaagctgtcgaggagagtgatgaagatgatgaa
gatgatgaggaccgtttccaaggagaactggaggatcttattgatgataatcctatcgaa
gagagcgaaggagaggacagtgatggttccggtggttctaaaaagcgtaaaaagagtgat
gatgaagactttgacgatcgactggaagatgaggactatgatcttattgaggaaaacttg
ggagtcaaagtggaaaggaaacgatttaaacgtctacgtcgaatacaagatgaggagtcg
gaggaagagcaggagcacgaagcggtagaagaacgggacgctatcgcaaatgaattattc
gaaggatctggtgatgaggatgaaagaagaagcgaacgtagccataggcctgaaccagag
acttttgacgaggagggttctgatggagattattctgagggtgatgattttattgtcgac
gatgatggaagacctattgctgaaaggcgaagaaagaagaaaccaatattttcagatgcc
gcgttacaagaagctcaagatatttttggggtagactttgactatgatgagtttggaaag
tatggggaagaggattacgaagaggaagaagaagaggatgaggaagatgaatatgttgat
gaagatggtgatggggaacgaccgcgtcgtccaaaaaaacaacccaaaaagaaaacaaca
cggaaaagtatctttgaaatatatgaacccagcgagctcaagcgaggacattttactgac
atggacaatgagattcgtaatactgatatacctgagcgaatgcaactacgttcagtacct
gttgtcgcagtcccagagggatcagatgaactggatttggaagcagagtggatatataaa
caggcattctgtcgtccgtcggtctccgttcaagattctcatttaaatgctgaggctaag
gaaagggcacgtaagggaccacagacagtaggaaagatcaaaaaagccttggattttatg
cgtaatcaacacttcgaggttccgtttatatcattttatcgaaaggaatacgttttacct
gaactaaacataaacgatctatggaaagtatacaaatttgacgtgaaatggtgtcagctt
cggcaaagaaaagaaaacttgttacaactgtttgaaaaaatgagaaattatcaactggat
gaaatcatgaaaaacgctgaggctcctctgccagagggactgcgactgataaaggatgac
gatatcgagagattgcgaaatgttcaaaccagcgaagaattgaacgacgttcatcatcac
ttcatgttgtattacagccatgagattccacctatgcaagaggccgtccgcaagaaggaa
agagaagcacgagctgcagcaagagcggctaaaagaagacagcagatagctgatgctgaa
gaaaatggggaggatccacctccagaagacgatgttgaagctgacgaagaagaggaacct
gacgagacgctgaaacaagctgtcagaactgggccttacactatttgtagaaaggctggt
ctggacggtcttgccaagaagttcggtttgtctccagagcattatgcagagaatcttcgt
gacaattaccaacgtcatgaagttgatcaggaaccaacggaaccttctgtagttgccaat
gacttctgtggtaagaagtttaagactccggaagaagccttgaaggccacacaactgatg
gttgccattcagcttgcaagggaacctcttgttcgcaaatgcgttagagaaatgtatatg
gagagagcaaaactgtctgtcacacctaccaaaaaagggataaaagagattgatgaaaac
cattccatatatacaatgaagtatctgaaagacaaacctgtaagagatcttgttggcgat
caattcctcaaactaagtattgccgaagaagataaactcatcaccatttcaatcagtgat
tcgattgagggcaatactagtaacaattatgtagacgaaatgaagcaactttattacagg
gatgaatttagtaagaatgttcaagactggaatgcattgagagtagggagcgtggagatg
gctttaacgaaaatggtcattcccgaattaaagaaggagttgaaggcgaatctaattgca
gaagctaaggaatgcgtgatgcgagcgtgctgccgaaagatgtataactggctcaaagtg
gctccgtatagctgtgatttccctgaggaagaagatgaagagtgggatacgagcaagggg
ttacgtgtgatggctgtatcttatgtgcccgattactccaaagcagcattcacatgtctt
gttgcacctgatggcgagtgtacagattatctgcggctaccacatttaatgaaaaagaaa
aacagtttcagagaggatgaaaaagctatgaaggaagctgatttgctggcaattcgtaat
tttattgcaacaaagaaaccgcacgttgttgttgtgagtggtacatccagggaggcaaca
atggtcgttgctgatatcaaagagtgtataagtaacctggtggaagaagaacaatttcct
aacattcaaatagaagtatgtgacaacgagctcgcccagatctactcaaacagtaacaaa
ggagtgtcagaattcagggattatccagaattacttagagaagctatttcaatggcacgg
cgtatgcaagatccgttagtggaattttcacagctatgcacagcggatgaagaaatcttg
tgtctcaagtaccatcctttacaagatcaactccctaaggaagaccttttagaaaatcta
tatttagaattcgttaatcgagtaaatgaggttggtgtggatgtgaacaaagcagtccaa
caagcttatgctggcaacttggtacaatttgtctgcggcttgggacctcgaaaaggacag
gccttaattaaaatgctaaagcaaactaatcaacgattagagaatagaacgcaattggtc
acagcttgtcatatgggccctaaggttttcattaattgcgccggttttatcaagatagac
acaaatagtttgggagacagtactgaagcatatgtggaagtgcttgacggctcgcgtgtt
catccagagacatatgaatgggccagaaaaatggcagtagacgcactagagtacgatgat
gaagatgcaaatccagcaggggcattggaggaaatcttagaatcgccggaaagattgaag
gatcttgatcttgacgcatttgccgaagaattagaaagacaaggttttggtaacaaatgc
ataacactgtatgacatcagggcggaattaaatagcagatacaaagaccttagagtgcca
tatcaatctctcagtgctgaaaaattgttcgatgtattgaccaaggagacaccggaaacg
ttctatatcggcaaaatggttgaagccaccgtatgtggcataactcacaggaaacctcaa
ggtgaacaactagatcaagcaaatccggtacgaaatgatgagacaggtctttggcagtgt
ccattctgtctaaagaatgatttccctgagttgtcggaagtatggaatcactttgatgct
ggagcctgcccaggaaaagctaccggtgtcaggttgcgcttggaaaataatatatcagga
tatattcacatcaagaatctgtctgataaacatgtagcgaatcccgaggaaagagtcaga
attggtcaaatcattcattgccgtataatcaagattgaggtcgacagattcagtgtagaa
tgtaccagtaaaagcagtgatcttgctgataaaaatcatgaatggagaccgcaaagagat
ccgttttatgatatggaagcagaacaaaaggatcaacaggtagaagaagatgcaaaaaaa
gcaaaacaacgacagacttatataaaacgcgtcattgtacatccagcatttcataatatc
agttttgccgaagctgagaaattcatgcaaaatatggatcagggtgaagcgatagttcga
ccaagtagcaaaggtgcagatcacctcacagtaacgtggaaagtgactgacaaaatctgt
caacatatcgatgttcgagaagaaggcaaagagaataccttctcgcttggccaaagttta
tggatcggtaacgaagagtttgaagatttggacgaaatcattgccagacatgttaatccg
atggcagctcatgctagagatttgttgtactttaaatattataaggataccgaaggtggc
ttgaaggacaaagcagaagagttattgaaagatgagaagaaaaagaaccctggaaagatt
cattatttcatatccgccgcaaagaattaccctggaaaatttgtactgtcttatttacct
cgcgttcgctgccgacacgaatatgtaactgttacaccagagggattcaggttccgggga
caaatgttcgacaatgtcaactccttgttccgttggttcaaggaacatttccgagaccct
gtccctggtcaaggaactccaagcacacctcgaggtgcgatgacatctagaaccccatac
cataatactccgggtgtgaatatgtcaagtatgaatcaggaggcaatacagagagtagcc
caaaatctaccgcatcacatgcttcactctctgtcacaagttgcaaatcaaactccacat
cattatccaccgcatactcctggcgcagcaagcgcaggaccgtacggaggcatgcatacc
tatcccaatactccttacaccccatcgggacaaacaccattcatgaccccgtatcagact
ccccatcatacacctcaccacggtcagccaacgcctaggtacggccagcaaacgccaaat
catcaccaaggccagtttgttcatcctgggccaaccacagtgacatctgctcaccataga
acaacaccttcacatcgcccaacaccgcaaatgcccacactagccggagacccgatggat
tggaaaaaagctgccgaggcatgggctaaactgaaacagatcactcccaggatctctggg
aacagcactcctagatatgaggactcgagaaaaactccgcggggatacgacgatggatca
ggtcgagctacaccccgcaacaggccaccaacggcacgtacaccgtcgtataaatcaccg
agaggaaccccacatacgaattcgagtcccaggagtatgtctcttagcggagacggtact
ccgttgtacgatgaaaattaa
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integrated database retrieval system
