Neodiprion lecontei (redheaded pine sawfly): 107222318
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Entry
107222318 CDS
T09006
Name
(RefSeq) exosome complex component RRP42 isoform X2
KO
K12589
exosome complex component RRP42
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107222318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nlo03019
]
107222318
Messenger RNA biogenesis [BR:
nlo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
107222318
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
107222318
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
107222318
NCBI-ProteinID:
XP_015517117
UniProt:
A0A6J0BS46
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Position
4:34935111..34937220
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AA seq
291 aa
AA seq
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MANTLLSLAEKTFIVHGVDDNYRTDGRNRSEYRPMEVETKVLPHTSGSARLRLANTDILV
GVKAEVDTPYPDNPNEGKLEFFVDCSANATPAFEGKGGDNLGTEISNTLTLAYQSSHVLD
LTTLCILPQQKCWKLYVDVLILQCDGNLFDAVALAVKAALYSAQIPKVTTATLDGGKADI
QLSDDPFDCVKLDVGSFPVLVTLCKIGENCVVDPTSEEEECSAASIVVAVMPNGRITSVV
KTGYGSLQPSTLVKTLELAKDIGIKLNAGIMNALKEEDELGSQREIFGFLK
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacacattgttgagcttagctgaaaaaacatttatagtgcacggagtggatgat
aactaccgaaccgatggcagaaatagatctgaatatcgcccaatggaagtggaaacaaaa
gtcttacctcatactagtggttcggctcgtttacgactagcaaatactgatattctagtc
ggtgttaaagctgaggttgacacaccctatcccgacaaccctaatgaaggaaaattggaa
ttctttgttgactgttccgccaatgctacaccggcatttgaagggaaaggaggtgacaat
ttaggtacagaaataagcaatactctaacgttagcttaccagtcatctcatgttcttgat
ttaacaacactgtgcattttacctcagcaaaagtgttggaaattatatgttgacgtttta
attcttcaatgcgatggcaatttatttgatgctgtagcattagcggttaaggctgcatta
tacagtgcacaaattcccaaagttacaactgcaacacttgacggtggtaaagctgacatt
caattatcagacgatcctttcgattgtgttaagctggatgttggtagttttcctgttctg
gttaccctttgcaaaataggagaaaattgtgtagttgatccaacttcagaggaggaagag
tgtagtgcagcaagtatagttgtcgccgtaatgcccaatggtcgtataacatctgtggtg
aagacgggatatggcagtcttcaaccctcgacattggttaaaacattagagctcgcaaaa
gacattggaattaagttgaatgcaggaattatgaatgcattgaaggaggaggacgagtta
ggttcgcagagagaaatttttgggtttcttaaataa
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