Neodiprion lecontei (redheaded pine sawfly): 107222815
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Entry
107222815 CDS
T09006
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo04382
Cornified envelope formation
nlo04512
ECM-receptor interaction
nlo04518
Integrin signaling
nlo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107222815
04518 Integrin signaling
107222815
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107222815
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
107222815
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nlo04147
]
107222815
00536 Glycosaminoglycan binding proteins [BR:
nlo00536
]
107222815
Exosome [BR:
nlo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107222815
Glycosaminoglycan binding proteins [BR:
nlo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107222815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Chitin_bind_4
Motif
Other DBs
NCBI-GeneID:
107222815
NCBI-ProteinID:
XP_046587714
UniProt:
A0ABM3FI61
LinkDB
All DBs
Position
1:33775540..33799677
Genome browser
AA seq
2429 aa
AA seq
DB search
MHGRNKAALCTLVIAALVLQITKAQTDSEGEELVYDISDTQKTQYLNQNFDTSAYNYGYE
VSPDGQFHHEVHGPDGVTYGCYGYVNPFGKLTATFYLSDGWGYRIVRPGDNVELFLHKHE
HHENHEHGDHDDDGHDHEDHHNHHDHHGILTAWKDLYFPPVCGQFESTNEKPITFQPGRP
TIPNAPSQGGDGEPSRPVGFPARPGTPGSPGTAAQPGYPGTPGRPGTPDTPAIPAQPGYP
GTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQP
GYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIP
AQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTP
AIPAQPGYPGTPGKPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTP
GTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRP
GTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTP
GRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYP
GTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQP
GYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIP
AQPGYPGTPGKPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTP
AIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTP
GTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRP
GTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTP
GRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYP
GTPGKPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQP
GYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIP
AQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTP
AIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTP
GTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRP
GTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTP
GRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGIPGTPGTPAIPAQPGYP
GTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGKPGTPGTPAIPAQP
GYPGTPGRPGTPGTPAIPAQPGYPGTPGKPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIP
AQPGYPGTPGKPGTPGTPAIPAQPGYPGIPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTP
AIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTP
GTPAIPAQPGYPGIPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRP
GTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTP
GRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYP
GTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQP
GYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIP
AQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAILAQPGYPGTPGRPGTPGTP
AIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGSPGRPGTP
GTPAIPAQPGYPGTPGRPGTPGTPAIPAQPGYPGKPGTPGTPAIPAQPGYPGSPGYPGYP
GYPSYPEPGYPGYPGYPGYPEPGTQPEPGYPGYPGYPGAPNGPIGGIGPEGPVGGIGGDG
GIGGDGGVGGEGGVGPDGPDGPWPTGPPGPDGPWPGDPDYVPRAQPTQRPSYFNKQNVPY
TPITAGSFIESKYPESKKLTSDSMYNSPTRQLSSANGNSEGTKKTASNQGLIEKFKQSNQ
LPKSGYTEPQVQPDAAGQARIPNSAEQSQ
NT seq
7290 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggcgaaacaaggccgcactctgcaccctggtgatagcagcacttgttctgcaa
atcactaaggcacagacggactcagaaggagaagaactcgtatacgacataagtgacaca
caaaagacacaatacttgaaccagaatttcgatacgagtgcttacaattacggatatgaa
gtatctccggacggtcaatttcatcacgaagtgcacggtcctgacggcgtaacttacgga
tgttacgggtacgtcaacccgttcggtaaattgacggcaacattttatttaagtgacggt
tggggctaccgtattgtgcgtccgggtgacaatgtggagctctttcttcacaagcacgaa
caccacgaaaatcatgaacacggtgaccacgacgatgatgggcacgatcacgaagatcat
cacaatcatcatgatcatcatggcattctgacagcgtggaaggatctatatttccctcca
gtttgtggccaatttgaaagcacgaatgaaaaacccatcacattccaacccggtcgaccg
acgataccaaacgcgccgtcgcaaggtggtgatggggaaccatctcgtcccgtgggattt
cctgctagacctggaacaccaggctcaccggggactgctgcacaacccggatacccaggc
acacccggcaggcccggaactccagatacaccggcaattccagctcaaccaggatatcct
ggcacacctggcagacctggcacccctggtactccggcaatcccagctcaaccagggtac
ccaggcacacccggcagacctggcacacctggtactccagcaatcccagctcaaccagga
taccccggcacacccggtagacctggcacccccggtactccggcaatcccagctcaaccg
ggataccccggcacacccggtagacccggaacgccaggaacaccggcaatcccagctcaa
ccaggataccccggcacacccggcagacctggcacccccggtactccagcaatcccagca
caaccgggataccccggcacacccggcagacctggcacccctggtactccggcaatccca
gctcaaccaggataccccggcacacccggcagacccggaactccaggaacaccggcaatt
ccagctcaaccaggataccccggcacacccggcagacctggcacccctggtactccggca
atcccagctcaaccagggtacccaggcacacccggcagacctggcacacctggtactcca
gcaatcccagctcaaccgggataccccggcacacccggtaaacccggaactccaggaaca
ccagcgattccagctcaaccaggataccccggcacacccggcagacctggcacccctggt
actccagcaatcccagctcaaccaggataccccggcacacccggcagacccggaacgcca
ggaacaccggcaatcccagctcaaccaggataccccggcacacccggtagacctggcacc
cccggtactccggcaatcccagctcaaccgggatatccaggcacacccggcagacccgga
actccaggaacaccggcaattccagctcaaccaggataccccggcacacccggcagaccg
ggcacccctggtactccagcgatcccagctcaaccaggataccccggcacacccggcaga
cccggaactccaggaacaccggcaattccagctcaaccaggataccccggcacacccggc
agaccgggcacccctggtactccagcgatcccagctcaaccaggataccctggcacacct
ggcagacctggcacccctggtactccggcaatcccagctcaaccaggataccctggcaca
cccggcagacctggaacgccaggaacaccggcaattccagctcaaccaggataccccggc
acacccggcagaccgggcacccctggtactccagcgatcccagctcaaccaggataccct
ggcacacctggcagacctggcacccctggtactccggcaatcccagctcaaccaggatac
cctggcacacccggcagacctggaacgccaggaacaccggcaatcccagctcaaccggga
taccccggcacacccggtagacccggaacgccaggaacaccggcaatcccagctcaacca
ggataccccggcacacccggcagacccggaactccaggaacaccggcaatcccagctcaa
ccaggataccccggcacacccggtagacctggcacccccggtactccggcaatcccagct
caaccgggataccccggcacacccggtagacccggaacgccaggaacaccggcaattcca
gctcaaccaggataccccggcacacccggtaaacccggaacgccaggaacaccggcaatc
ccagctcaaccaggataccccggcacacccggcagacctggcacccccggtactccagca
atcccagctcaaccgggataccccggcacacccggcagacctggcacccctggtactcca
gcaatcccagctcaaccaggatacccaggcacacccggcagacctggcacacctggtact
ccggcaatcccagctcaaccgggatatccaggcacacccggcagaccgggcacccctggt
actccagcgatcccagctcaaccaggataccctggcacacctggcagacctggcacccct
ggtactccggcaatcccagctcaaccaggatacccaggcacacccggcagacctggcacc
cctggtactccagcgatcccagctcaaccaggatatcccggcacacccggcagacctggc
acccctggtactccggcaattccagctcaaccaggataccccggcacacccggcagaccg
ggcacccctggtactccagcgatcccagctcaaccaggataccctggcacacctggcaga
cctggcacccctggtactccggcaatcccagctcaaccaggatacccaggcacacccggc
agacctggaacgccaggaacaccggcaatcccagctcaaccgggataccccggcacaccc
ggtagacccggaacgccaggaacaccggcaatcccagctcaaccaggataccccggcaca
cccggcagacccggaactccaggaacaccggcaatcccagctcaaccaggataccccggc
acacccggtagacctggcacccccggtactccggcaatcccagctcaaccaggatacccc
ggcacacccggtaaacccggaacgccaggaacaccggcaatcccagctcaaccaggatac
ccaggcacacccggcagacctggcacacctggtactccggcaatcccagctcaaccggga
tatccaggcacacccggcagaccgggcacccctggtactccagcgatcccagctcaacca
ggataccctggcacacctggcagacctggcacccctggtactccggcaatcccagctcaa
ccaggatacccaggcacacccggcagacctggcacacctggtactccggcaatcccagct
caaccgggatatccaggcacacccggcagacctggcacccctggtactccggcaatccca
gctcaaccaggataccctggcacacctggcagacctggcacccctggtactccggcaatc
ccagctcaaccaggataccccggcacacccggcagacccggaactccaggaacaccggca
attccagctcaaccaggataccccggcacacccggcagaccgggcacccctggtactcca
gcgatcccagctcaaccaggataccccggcacacccggcagacctggcacccctggtact
ccggcaatcccagctcaaccagggtacccaggcacacccggcagacctggtacccctggt
actccagcaatcccagctcaaccgggataccccggcacacccggcagacctggaacgcca
ggaacaccggcaatcccagctcaaccaggataccccggcacacccggcagacctggtacc
cctggtactccagcaatcccagctcaaccgggataccccggcacacccggcagacctgga
acgccaggaacaccggcaatcccagctcaaccaggataccccggcacacccggtagacct
ggcacccccggtactccggcaatcccagctcaaccgggataccccggcacacccggtaga
cccggaacgccaggaacaccggcaattccagctcaaccgggataccccggcacacccggt
agacccggaacgccaggaacaccggcaatcccagctcaaccaggataccccggcacaccc
ggcagacccggaactccaggaacaccggcaattccagctcaaccaggataccccggcaca
cccggtagacctggcacccccggtactccggcaatcccagctcaaccaggataccccggc
acacccggtatacccggaactccaggaacaccggcaattccagctcaaccaggatacccc
ggcacacccggcagacctggcacccctggtactccggcaatcccagctcaaccagggtac
ccaggcacacccggcagacctggcacccctggtactccagcaatcccagctcaaccggga
taccccggcacacccggtaaacccggaactccaggaacaccagcgattccagctcaacca
ggataccccggcacacccggtagacctggcacccccggtactccggcaatcccagctcaa
ccaggataccccggcacacccggtaaacccggaactccaggaacaccagcgattccagct
caaccaggataccccggcacacccggtagacctggcacccccggtactccggcaatccca
gctcaaccaggataccccggcacacccggtaaacccggaactccaggaacaccagcaatt
ccagctcaaccaggatacccaggcatacccggcagacctggaacgccaggaacaccggcg
atcccagctcaaccaggatacccaggcacacccggcagacctggaacgccaggaacaccg
gcaatcccagctcaaccaggataccctggcacacccggcagacctggaacgccaggaaca
ccggcaatcccagctcaaccaggataccctggcacacccggtagacccggaactccagga
acaccggcaatcccagctcaaccaggataccctggcacacccggtagacccggaactcca
ggaacaccggcaattccagctcaaccaggatacccaggcatacccggcagacctggaacg
ccaggaacaccggctattccagctcaaccaggataccccggcacacccggcagacctggc
acccctggtactccagcgatcccagctcaaccaggataccccggcacacctggcagacct
ggcacccctggtaccccggcaatcccagctcaaccaggataccctggcacacccggtaga
cccggaactccaggaacaccggcaatcccagctcaaccaggataccctggcacacccggt
agacccggaactccaggaacaccggcaatcccagctcaaccaggataccccggcacaccc
ggtagacccggaactccaggaacaccggcaattccagctcaaccaggatacccaggcaca
cccggcagacctggcacacctggtactccggcaatcccagctcaaccaggataccctggc
acacccggtagacctggcacacctggtacaccggcaatcccagctcaaccaggataccct
ggcacacccggtagacccggaactccaggaacacctgcaattccagctcaaccaggatac
cctggcacacccggtagacccggaactccaggaacaccggcaattccagctcaaccagga
taccccggcacacccggtagacccggaactccaggaacaccggcaattccagctcaacca
ggataccccggcacacccggtagacccggaactccaggaacaccggcaattccagctcaa
ccaggataccccggcacacctggcagacctggcacccctggtactccggcaatcccagct
caaccaggataccctggcacacccggcagacctggcacccctggtactccggcaatccca
gctcaaccaggataccctggcacacccggcagacctggcacccctggtactccggcaatc
ccagctcaaccaggataccccggcacacctggcagacctggcacccctggtaccccggca
atcctagctcaaccaggataccctggcacacctggcagacctggcacccctggtactccg
gcaatcccagctcaaccaggataccctggcacacccggcagacctggaacccctggtact
ccggcaatcccagctcaaccaggataccctggcacacccggcagacctggcacccctggt
actccggcaatcccagctcaaccaggataccctggctcacccggtagacccggaactcca
ggaacaccagcaattccagctcaaccaggataccccggcacacccggtagacccggaact
ccaggaacaccggcaattcccgctcaaccgggatatcccggaaaacctggaactccggga
acacccgcgattccagcccaacctggatatcctggcagtcctggctatcctggttaccct
ggctatcctagctatccagagcctggttatcccggttatcccggctatcccggctatcca
gagccaggtacacaaccggaacctggatatcctggctatcctggttaccctggggcacca
aacggtccgattggcggaatagggcctgaagggcctgtaggtggtatcggcggcgacggt
ggcattggaggtgatggcggcgttggcggcgaaggtggcgttgggcccgacggtccggat
ggtccttggccaacaggtcccccagggccagatggaccgtggcctggtgatccagactat
gttcctcgagcacaacctacacagcgtccatcgtatttcaacaaacagaacgttccatac
actcccatcactgccggatcttttatcgaatcgaaatatccagaatccaaaaaactcaca
tccgattctatgtataattctccaactaggcagctcagctccgcaaatggaaactccgaa
ggtacaaagaaaacagccagtaatcaaggcttgatcgaaaaattcaagcaatcaaatcaa
ttgccaaaatcaggctataccgaacctcaggtgcaacctgacgcagcaggtcaagcaagg
attccaaattccgccgaacagagtcaatga
DBGET
integrated database retrieval system
