Neodiprion lecontei (redheaded pine sawfly): 107222860
Help
Entry
107222860 CDS
T09006
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03440
Homologous recombination
nlo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107222860
03450 Non-homologous end-joining
107222860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nlo03032
]
107222860
03400 DNA repair and recombination proteins [BR:
nlo03400
]
107222860
DNA replication proteins [BR:
nlo03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
107222860
DNA repair and recombination proteins [BR:
nlo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
107222860
BRCA1-C complex
107222860
NHEJ (non-homologous end-joining)
MRX complex
107222860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_21
Rad50_zn_hook
SbcC_Walker_B
AAA_15
SMC_N
AAA_29
AAA_16
AAA_22
AAA
AAA_13
ABC_tran
AAA_28
Motif
Other DBs
NCBI-GeneID:
107222860
NCBI-ProteinID:
XP_015517869
UniProt:
A0A6J0BTZ6
LinkDB
All DBs
Position
2:complement(11633789..11646247)
Genome browser
AA seq
1369 aa
AA seq
DB search
MSRVRRLGISGIRNFGPGDDERGLQTIRFSHPLTMIFGPNGTGKTTIIEALKYASTGDFP
PGCGANNQNSFVHDALLTDECSVKGVVIAEMCDTKGNIVTVSRRLLSVQKKFKKGCKVLD
TTLSTKNIKTGEKVSISHRCADVDLEMGLALGVSKPILNHVIFCHQEDSTWPLEDGKKLK
ERFDQIFDSDKYNKAVERIRKFNNKIKNDLRVTKAQRESLEILLEESNQKKKSLEKYETR
LVKSIQKVSEVVEKMKPLNEKMNELRDSEAHYIKLHTEKETKKTEYGLIKQQIMELKESI
QVLHDGTAEELQKEIAAFDNTRVEMESEMEMLKNKSRDMNKEESKLKVTISNKQLSIGKL
KEQAQALEKNISLRNRKLSQMRTEWGLDEVGEEVTETEAAVGFDQLKDKLTEMERNIKDI
ALKHQAVEKTLQEELDALRDQKSKLESGMVLFKRQIAEKRTETRRIRAQIEEVNMLASQL
ELVDSKLQEANTKLDTMAASFDVDAVKKNIEDEIKKRDQMELSLDKLDEEVKLLQQQSSL
HAELDLLRSALAVKEKDIQKLKNKHQANLKMLLKTEVLPESNLKHTLSGIHDSFSEQIKQ
LNHQLQKEQRVLTTLETTKKHHEHEIKEKNSELEDIQDKIATMCHGIDYEEVLLHAKKTV
QDLQDSKGMYTYKSIAYKDYIKKTDSCCPLCHRNFDSQQEIEEFKSELNEEVNKYPNQLK
TCEEKLKVQQERYDSLLQLKPLVDKVKQIEETTLKKLRNDLIQVKQKLSESHARVEKLQL
QIAEPEGKLAQCKDIVCDVAQWDQYSAEVVKLNQSIARVKARLSDKVGERSMQEAQAEQE
LLRKSLSTIRKRIEKLQSSLSTHNDKLQQARESRNRLVEEQLRMKSEVQKLQQLQDKLKD
LHAEEVSLQENVQQLQVQLGPVNQNLAAKNDSLQKIKREHRESLDNDRSVVSQKSRSLHD
LNTIQSQIDNSIRNGVTDSLRKSELEMKKYQQMDEELQKNKIEVTTKINEIINEISKQET
RKRDMSDNMILKEKGAAAVVLQREITELREKLGNMNYRQLLDHKKKLIDEEELLIREKNL
EQGGQDEMERNIKQLKRELNKEVYRLALKNYMRKSAEVVVQEEAINDLVAYTTALDRAII
EFHEERMASVNRIILRLWTQIYKGKDTTAIQIHTDSTEGMGNKKRVYNYKVVQEKQKVTM
DMKGRCSAGQKVLASIIIRMALAETFAKNCGIFALDEPTTNLDVHNIKSLAQALVSIVNL
RSKQQKNFQLIVISHDEDFITQLGKVDKVGKVYELYRNEKGLTEVKELCIENNATFDDCS
QNGESSGEEDAADVERRSRKRKELAEERKNLLKGNSSVSPPRKKRNERE
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagggtaagaagattagggatttctggaatccgaaacttcggccctggcgatgat
gagaggggattacaaacaataaggttcagtcacccgttgactatgatttttggaccaaat
ggaaccgggaaaacaaccattatcgaggccctaaaatatgcgagcacaggggattttccg
cctggctgtggtgcaaacaaccagaattcattcgtacacgatgctttgctaaccgacgaa
tgctccgtaaaaggtgtggtgatagctgagatgtgcgataccaaaggaaacatagtaacg
gtatcgcgaaggctattatctgttcaaaaaaagtttaagaaaggctgtaaagtcctggac
actactctgtctacgaagaacataaaaacgggagagaaagtatcgataagccatcgctgc
gccgatgtggatcttgaaatgggtttggctttgggagtgtcaaaacctattttaaatcac
gtaattttttgtcatcaagaagattcgacatggccattagaagatggaaaaaaactgaaa
gaaagattcgatcagatttttgactctgataaatacaacaaagcagtcgagagaattaga
aagtttaataacaagataaaaaacgatcttcgtgttactaaagctcagagagagtcgttg
gaaattttgcttgaagaatctaaccagaagaaaaagagcttggaaaagtatgaaactcga
ctggtaaagtctattcaaaaagtttctgaagttgttgaaaaaatgaagcctcttaatgag
aaaatgaacgaacttcgtgattctgaagcacattacatcaagttacatacggaaaaagaa
acaaaaaaaactgaatatggactgataaaacagcaaataatggaattgaaagagagcata
caagttcttcacgacgggacagcggaagaactgcaaaaagaaattgctgcattcgataat
acacgggttgaaatggaaagtgagatggaaatgctgaagaataaatcgagagatatgaac
aaagaggaaagcaagttaaaagtcactatcagcaacaagcaattatcgattggaaagttg
aaagagcaggctcaagcgttggaaaaaaatatttcgctccgtaaccgtaaacttagtcaa
atgcgaacagaatggggtctcgatgaagttggagaagaagtaacagagacagaagctgct
gttggtttcgaccaattgaaagataaattgactgagatggaacggaatatcaaggacata
gcgctcaagcatcaggctgttgaaaaaacattacaagaggaattggatgccctcagagat
cagaaatctaaactcgaatcaggaatggtcctgttcaaaaggcagatagctgagaaacga
acggagacaaggagaattcgtgcgcaaatagaggaagtgaacatgttagccagccaattg
gagttagtcgactctaaattgcaagaagcaaatacaaaacttgataccatggctgcaagt
tttgacgttgatgccgtgaaaaaaaacatagaagatgaaatcaaaaagcgggatcagatg
gaattgagtttggataaattggatgaagaagtgaaattacttcagcaacaaagttcatta
catgctgaattggatctgctcagatcagctttggcagtaaaagaaaaggacattcagaag
ttgaaaaacaagcatcaggcgaacttgaagatgcttttgaaaaccgaagtattaccggaa
tcaaatttgaaacatactcttagtggaattcacgatagctttagtgaacaaatcaaacaa
ttgaaccaccaattgcagaaagagcaacgtgtgctgaccacacttgaaactacaaaaaaa
catcacgaacatgaaataaaggaaaaaaatagcgagcttgaggacattcaagataaaata
gccaccatgtgccatggtatagactacgaagaagttttgctacatgcaaagaaaaccgtg
caagatttgcaggattccaaaggaatgtatacttacaaaagtatagcgtacaaagattat
ataaagaaaacagattcctgctgtccgctctgtcaccgtaatttcgatagtcagcaggaa
attgaagaattcaaatctgagttgaacgaggaagtgaacaaatatcctaaccagttgaaa
acttgtgaagaaaagttgaaagttcagcaagagcggtacgattctttgctgcaattgaag
ccacttgtggacaaagttaaacaaatagaagaaaccaccttaaagaagttgagaaacgac
ttgattcaagtgaaacagaaattatcagagtctcacgcgcgagttgagaaactgcaacta
cagattgctgaacctgagggtaaactagcgcaatgcaaagacattgtctgtgatgtagca
cagtgggatcagtattctgcagaagtcgtaaaactgaatcaatctattgctcgagtcaaa
gctcgtctttctgacaaagtcggcgagaggtctatgcaagaagcacaagccgagcaagag
ttgttgagaaaatctctcagcactatacgcaaaaggatcgaaaaactgcaatcatcatta
agtactcacaacgataaattacaacaggcaagagagtctagaaatagactggtcgaggag
caattgagaatgaagtctgaagtacagaaactacagcagctgcaggacaaattgaaagac
ttgcacgctgaagaagtatctctacaagaaaacgtgcagcaattgcaggtgcaattggga
cccgttaatcagaatctggcagccaaaaatgattcactccaaaaaataaagcgagagcac
cgagaatcgctggacaacgatcggagtgttgtatctcaaaaatcaaggagtctgcatgat
ttgaacactatccaatcgcaaattgataatagcatccgcaatggagtaacggactcgttg
aggaaatctgaattggaaatgaagaagtatcaacagatggatgaagaattgcaaaagaat
aaaattgaagttactacaaaaattaacgaaataattaacgaaatctcgaaacaagagacc
cgcaaacgcgacatgagcgacaacatgatattgaaggaaaagggcgcagcagccgtagtg
cttcagcgtgaaataacagagttacgagagaagttaggtaacatgaattatcgccagctg
ttagatcacaagaaaaaactaatagacgaggaagaacttctcattcgcgaaaaaaacctc
gaacaaggaggacaagacgaaatggagcgtaatattaaacagttgaaacgtgaattgaac
aaagaagtgtatagattggctcttaaaaattacatgcgcaagtccgctgaagttgttgtg
caagaggaagcaataaacgacctcgtggcgtatactacagccttggatagggcaataatt
gagtttcacgaagaacgaatggcttcagtaaaccggattatactaagattgtggacgcaa
atctataagggtaaagatacgacggctattcagattcatacagattcaaccgaaggaatg
ggcaacaaaaaaagagtttacaattacaaagttgttcaagagaaacaaaaggtcactatg
gacatgaagggacgttgcagtgcagggcaaaaggtacttgcgtcaatcatcataagaatg
gccttagctgaaacatttgctaaaaattgtggtatatttgcattagatgaaccgacaaca
aaccttgatgtgcataacataaaaagtctagctcaggcactggtttcaattgtgaatctt
cgttctaaacaacagaagaatttccaattgatcgttattagtcatgacgaagactttata
actcaactaggtaaagttgacaaagtcggaaaagtttacgaactttatcgaaatgagaaa
gggctgactgaggttaaagagttgtgcattgagaacaatgcaacatttgatgattgctct
caaaatggagaatcctcaggtgaagaagatgccgcagacgtggaaaggcgttcacgtaaa
cgaaaagaacttgccgaagaaagaaaaaatttgctgaaaggcaattcgtccgttagtcct
ccacgcaagaagagaaatgagagagaatga
DBGET
integrated database retrieval system
