Neodiprion lecontei (redheaded pine sawfly): 107222888
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Entry
107222888 CDS
T09006
Name
(RefSeq) ATP-dependent RNA helicase p62
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107222888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nlo03041
]
107222888
03009 Ribosome biogenesis [BR:
nlo03009
]
107222888
Enzymes [BR:
nlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107222888
Spliceosome [BR:
nlo03041
]
Complex A
U1 snRNP components
U1 related factors
107222888
Complex B
107222888
Ribosome biogenesis [BR:
nlo03009
]
Eukaryotic type
Pre-60S particles
Helicases
107222888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Late_protein_L2
Motif
Other DBs
NCBI-GeneID:
107222888
NCBI-ProteinID:
XP_015517904
UniProt:
A0A6J0BU35
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Position
3:21838056..21845403
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AA seq
543 aa
AA seq
DB search
MTYGGSSGGYRSSGGRGGSSQRSGYGSSSGGGSGGSSGRFSSRGGGGGSRGGRGGGGGGS
LRKPNWDYENLKPFKKDFYVPHVNVQNRHPREVEAYRADKQITLKGDALPNPIQFFEEGN
FPDYVMTGIRKQGFSEPTAIQAQGWPIAMSGRNMVGIAQTGSGKTLGYILPAIVHINNQQ
PLNRGDGPIALILAPTRELAQQIQTVASDFGSLSYVRNTCIFGGAPKGGQARDLERGVEI
CIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSA
TWPKEVRNLAEEYLTDYTQLNIGSLTLSANHNILQIIDVCQEHEKETKLGSLLQEIGNVN
DDGGKTIIFVETKKKVENITRSIRRYGWPAVCMHGDKSQQERDYVLREFRNKKGSILVAT
DVAARGLDVDDVKYVINFDYPSSSEDYIHRIGRTGRSQSTGTSYAFFTPQNSRQAKDLVN
VLQEANQVINPKLTEMASRGGGGGGYGGRNRWGYGGGRGRENNFSGSHKRFDSGRSNGYG
SYN
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgacttacggaggatcttcaggtggataccgtagtagcggaggccgtgggggaagcagt
cagaggtctggttatggcagcagtagcggcggtggaagtggaggtagtagtgggcgtttc
agtagccgtggaggtggtggcggaagtcgtggaggtcgcggcggcggtggagggggcagt
ttaagaaagccaaactgggactacgaaaacctgaagccattcaagaaagacttttatgtg
ccgcatgtaaatgtgcagaaccgtcacccacgcgaagttgaagcttatagagcagataag
cagatcacactgaaaggcgatgctctgccgaaccccatccaattctttgaggagggtaat
ttcccagattatgtcatgactggaatcaggaaacagggattttccgagccaactgccatc
caagctcagggctggcctattgctatgtctggacgcaatatggtaggcattgctcaaacg
ggatcaggaaaaactcttgggtacattttgcctgctattgttcatatcaacaatcagcag
cccctaaatcgaggcgatggaccaattgcgctgatcctcgcaccaaccagagaacttgcc
cagcaaattcaaactgtcgcaagcgactttgggtctctttcttatgttcgaaacacctgc
atctttggtggggcgcccaagggaggccaggcgagagatctggagcgtggagttgagatc
tgtattgctactccaggtcgattgatcgattttcttgagagaggaactacgaatctgcgc
agatgcacttacttggtattagacgaagctgacagaatgcttgacatgggttttgaacct
cagatcagaaaaatcattgaacagatcagaccagacaggcaggttcttatgtggtcagcc
acatggccaaaagaagtgcgcaaccttgctgaagaatatctcaccgactacacacagctg
aacatcggatccctcactctatctgctaaccacaatattctacaaataatcgacgtatgt
caggagcatgaaaaggaaaccaaattgggtagcttgttacaagagatcggcaatgtcaac
gacgacggtggaaaaaccatcattttcgtagagactaaaaagaaagttgaaaatatcacc
agaagcattcgccgctatggatggccagcagtttgcatgcatggtgacaaatctcaacaa
gaacgtgattatgttctcagagaattccgaaacaagaaggggtccatactcgtagcaaca
gacgttgctgctcgtggtctagatgttgacgacgttaagtacgtgatcaatttcgactac
ccgtcatcttctgaagactacattcatagaatcggcagaactggacgttctcaaagcaca
ggcaccagctacgccttcttcacaccacaaaacagccgacaggctaaagacttagtcaac
gttctccaagaagccaaccaagtcataaatcccaaactcaccgagatggcttcgcggggt
ggcggcggcggaggctatggaggaagaaatcgttggggctacggaggtggccgtggtaga
gaaaacaatttttctggatcacacaaacgatttgattccggtcgcagtaacggatacgga
agttataattga
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