Neodiprion lecontei (redheaded pine sawfly): 107223566
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Entry
107223566 CDS
T09006
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo04382
Cornified envelope formation
nlo04512
ECM-receptor interaction
nlo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107223566
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
107223566
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
107223566
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nlo04147
]
107223566
00536 Glycosaminoglycan binding proteins [BR:
nlo00536
]
107223566
Exosome [BR:
nlo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
107223566
Glycosaminoglycan binding proteins [BR:
nlo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107223566
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
107223566
NCBI-ProteinID:
XP_015518759
UniProt:
A0A6J0BWR7
LinkDB
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Position
2:32971562..32991474
Genome browser
AA seq
2144 aa
AA seq
DB search
MTRLGLRVLASLACLTVIVKGQNYTDTLRGPEPVVPLTRGDIGKPDGWNAEQDDYDDPYY
GNYDADGRLINPADADANGWDDQSSPNLTAGDSNLSGGNSYNYNNTSREGYSNGNRVYGS
GSRRGGSAGGYYYNSSSARSGGNPYSSTYGTSSGYGTDGASSDPRGSPYGYGSGGSTGRS
GYNSGSGSAANSGAGGEGAGRSSYYARNDPYYASRGGDRRYPYGSSSSGSQASGTFNSVG
AEVSSTDRGNDPYYASRDGNRRYPYGSSSSGSRTSGTPNRVGSGSTNTDRQNDPYYGRRA
GESSYSYGGSSSGYRSAVSVDSSRSGGSSTGERNDPYIVRGSGGRNYPDGSSWAGSQLTG
VPEVPPSGRTTSGGGGGEGSVGSRGSGGDDYANRVDYRYGNYGRQDDGDTNYPSSYVAVP
VPGAAKNCTSGSGCCVRKCFAEKGSRGPSGIPGPVGPKGQQGFPGLEGLLGPKGAKGESG
LQGPRGPKGDRGKMGLPGHPGVNGRDGGQGAPGAAGLPGRDGCNGTDGAPGLDGRPGQPG
PRGFKGTPGPKGDKGIAAFAGSFPVGQKGEPGIDGVPGPQGLPGPEGAPGFPGPKGDTGP
EGPRGLRGPKGERGPMGIGFEGPKGEKGIKGEKGPPGVVNSVPFTGNKGTTGPQGATGEK
GQKGEIGPEGERGEPGYTGDAGPPGRDGVKGEKGLPGPHGDRGREGDSGPPGPQGQKGDR
GDDGLEGLPGRPGAKGEPGLDGPPGLSGMVGPAGPPGGGHGVAGPPGEPGPRGYPGPSGP
KGLDGFPGQPGPRGPQGLAGGLGIPGTPGREGAPGEKGAKGNAGLDGAPGEIGPRGYDGL
EGPAGPRGFPGDNGISIPGPKGMDGFPGSDGAKGQKGEPGQMGRRGYPGDSLMGIPGAPG
AAGFPGAPGNPGRDGPAGIPGEPGPKGDIGGRCSDCRPGEVGKKGDRGYDGLPGAEGPRG
PPGERGYAGASGADGSPGSIGPPGDKGEDGRDGVPGPQGERGAAAVVSGSQLIMKKGDQG
ERGVPGDRGPFGPPGQRGEKGSVGYGGLPGEKGAKGDRGYPGIDGANGRPGTPGAKGDEG
LSIKGEAGIPGQPGIKGTKGLPGLDGPQGEPGTCPFSEYKNAPKGDRGLPGLKGESGIPG
LDGLPGEKGYPGPEGPAGPPGAIGPPGPPGQRGLPGPRGDKGQPGIMGFDGVPGPVGPRG
YPGLPAVKGDKGEAGIPMQGNPGPTGPEGRKGERGLPGPPGKDGRVGSSGPPGIIGEKGD
LGITGLDGLPGAPGDKGDTGPIGPPGPPGISGTPGADGPKGEPGLVGEPGKDGVSGFPGY
KGERGSTGETGPKGYPGGRGAPGSPGLPGVNGLPGAKGDIGLQGMDGFPGIPGLDGLPGR
AGTPGDKGDIGFQGIPGMPGLIGPKGPKGDRGFPGLDGMKGEPGAVSEKGQKGEPGMPGA
RGPQGPPGRDGLDGAKGEPGRAGIGRDGLPGLKGEPGSPGKDGIPGLPGEKGFTGVPGLL
GIKGDLGYPGEPGLPGRDGIDGSPGPEGAEGPVGLPGYPGAEGEKGYPGINGLDGSKGDT
GLEGIPGPPGLIGEVGEKGDRGPPGPQMTIKGDKGEPGRQGYDGVKGEMGEQGIPGFDGP
AGAKGDQGVPGPMGIPGAPGYEGQKGDTGPMGPVGPVGLTVKGEKGLHGLLGKNGRDGRP
GIPGEKGNPGDAGRDGSPGKPGPPGPIGPQGQKGDMGPVGFDGIPGDDGLEGSPGATGPP
GARGLKGDTGPPGAYGAPGQKGEQGLQGPPGFDGRPGEKGDMGADGFNGAPGVQGEKGDK
GFQGLPGAPGVTGYEGIKGERGDDCIQPLPGPKGERGPPGATGIVGPPGEKGAQGRIGFP
GLKGEKGSPGLNGITGPVGPPGLPGPPGLQGIQGVQGPIGYPGQKGNQGADCQATPDYLT
GILLVKHSQTPIVPVCEPGHIKLWEGYSLLYLDGNERGHSQDLGSAGSCIRKFSTMPFLF
CDVNNVCNYGSRNDRSYWLSTNSPLPMMPVEESAIESYISRCVVCEVPANVIAVHSQSLS
IPECPDRWTSLWIGYSFIMHTGAGAQGGGQSLASPGSCLEDFRATPFIECNGAGGTCQYF
SNEFSYWMVTIEDIAQFKEPEKQTLKAGNLRTRISRCKVCIKNT
NT seq
6435 nt
NT seq
+upstream
nt +downstream
nt
atgacccggttaggattgcgagttctcgcgtccctagcttgcttgacagttatcgtcaaa
gggcaaaattacacggacacgttacgagggcctgagccagtagtcccattgactcgaggc
gatataggaaagcccgatggttggaacgcggagcaggatgattacgacgacccatactac
ggaaattacgacgctgacggacgtttgattaaccccgctgacgcagatgcgaatggctgg
gatgatcaatcttcgccaaatctgacggctggagactcgaatctctctggaggaaactct
tacaattacaataatacaagtcgagagggttatagcaacggcaatcgtgtgtacgggagt
ggttcccgtcggggtggaagtgcaggtggctactactacaatagcagcagtgcaagaagt
gggggaaatccctactcatcaacctacggtacgtccagtgggtacggtactgacggcgcc
agcagtgatcctcgtggttcaccctacgggtatggaagcggaggttcaaccggacgctca
ggttacaacagtggatctggctctgcggccaacagcggtgctggaggcgaaggagcaggg
cgttcatcttactatgcacgcaacgatccgtactatgcgagtcggggtggagacagaaga
tatccttacggaagttcaagttccgggtctcaagccagtggaactttcaacagcgtagga
gcagaagtttcttctaccgatagaggaaacgatccgtactatgcaagtcgggatggaaac
agaagatacccttacggaagttcaagttccggctctcgaaccagtggaactccgaacaga
gtaggatcgggaagcacaaataccgacagacaaaacgatccttactacggaaggagagcc
ggagaaagcagttactcttacggaggttcgagttctggttatcggtccgcagtatctgta
gactcgtcaagatcaggaggctcgtcaactggggaacgcaatgacccgtacattgtgcgc
gggagtggaggacgaaactaccccgacggtagttcttgggctggttctcaactgacggga
gtgcccgaagttccaccatcgggacgtactacttctggcggaggaggtggagaaggttca
gtgggaagtcggggatctggtggcgatgattatgcaaacagagttgattatcgttacggt
aactacggacgacaagacgacggagatacgaattatccaagcagctacgtagcagttcct
gtacccggtgcagccaagaactgtacatcgggctctggatgctgcgttcgcaaatgcttt
gccgagaaaggatcacgtggaccatcaggaatacctggaccagtaggacccaagggccag
caaggttttcctgggctggaagggctgcttggacctaagggtgcgaagggagagtcgggt
ttgcagggacctcgcggaccaaagggagatcgaggtaaaatgggacttcctggacatcct
ggtgttaatggtcgagacggaggtcaaggagccccaggagcggctggtctgccaggtcgc
gatggatgcaacggaactgacggagcccctggtcttgacggccgtcccggtcaacctgga
cctcgaggtttcaaaggaacgcctggtcccaagggtgacaaaggtattgcagctttcgca
ggatcattcccggtagggcaaaagggagaacccggtattgatggagttcccgggcctcaa
ggtctgccagggcctgaaggagccccaggatttccggggccaaagggtgatacgggacca
gagggacctagaggacttcgaggtcctaagggtgagaggggacccatggggattggattt
gaaggtccgaagggagaaaaggggatcaagggggagaaggggcccccaggggtagtaaat
agtgtgcccttcacgggtaacaaaggaaccaccgggccacagggagcaactggagaaaag
ggacaaaagggagagattggaccggaaggcgaaagaggtgaaccagggtatactggagat
gctgggccgcccggaagagacggtgtgaaaggagaaaagggacttcccggtccacatggt
gatcgtggtagagaaggagattctggacctcctggaccccaagggcaaaaaggtgaccga
ggtgatgacggattagaaggactccccggacgcccaggtgctaaaggagagcctgggctc
gacggtcctcccgggctgtcgggaatggttggacctgcaggacctcctgggggtggccac
ggcgtggctggaccgccaggagaaccaggaccgagagggtaccctggaccatctggaccc
aaaggattggacggttttcctggacaacctggacctagaggacctcagggtctcgctggt
ggccttggaatacctggtaccccagggcgtgaaggagccccgggagaaaaaggagctaag
ggtaatgcgggactggacggtgctcccggagaaattggcccgaggggttacgacgggcta
gaaggacctgctgggcctcgtggtttccctggtgacaacggaatttccatccccggacct
aaaggaatggacggctttcctggaagcgatggcgcgaagggtcaaaaaggtgaacctggg
caaatgggtcgcagaggataccccggagactctttaatgggcatccccggagcacctgga
gcagccggttttccgggagcgccaggtaaccctggtcgagatggtcctgctggaattccc
ggtgaaccagggccgaagggagacattggaggtcgttgttcagactgcagacccggcgaa
gtaggaaaaaaaggtgaccgtggatatgatggattaccaggcgctgagggacctcgtggt
cctccaggtgaacgtggatacgcgggcgcgagtggcgctgacggatcgccaggatccatt
ggtcctcctggagataagggagaggacggtagggatggggtaccgggtcctcagggtgaa
cggggtgctgcagctgtagtatcaggcagccaattgattatgaagaagggtgatcaagga
gaaagaggcgtaccaggtgaccgtggtcctttcggaccacctggacaacgcggagagaag
ggcagtgtaggttatggaggtctccccggagagaaaggagctaagggtgaccgaggatac
cctggtattgatggagctaatggaagaccgggaacaccaggagccaagggagatgaaggt
ctcagcattaagggagaggcaggaattcctggccaacctggaatcaaaggaactaaagga
ctacccggtctagacggtcctcaaggagaaccaggtacatgtccattttcggaatacaag
aacgcacccaagggtgaccgggggctgccaggattgaagggtgaatctgggataccggga
cttgacggactaccaggtgaaaaaggatatccaggtcctgaaggacctgcaggacctcca
ggagctattggaccccctggaccccctggccagcgtggtttacccggtccacgtggtgac
aaaggacagccgggtattatgggattcgatggagtaccgggtcctgtaggtccgcgagga
tatcctggattaccagccgtcaaaggagacaagggtgaggctggtattcccatgcagggg
aaccccggtcctactggtcctgaaggaagaaaaggtgaacggggtctacccggaccaccg
ggtaaagatggacgagtgggaagctcagggccgccaggtattattggagaaaagggagac
ttaggaattacgggattggatggacttccaggagcaccgggagataagggagacactggt
ccaattggtccgcctggaccacctggaatttctgggacgccaggtgccgatggaccaaaa
ggagagccgggcttggtcggggaacctgggaaagacggagtttctggattccccggttac
aaaggtgaaaggggatccacgggcgagacaggtcctaaaggttacccaggaggccgcggt
gcgcctggatcaccgggacttccaggagtcaatggattacctggcgccaagggagacata
ggacttcaaggtatggacggtttccctggtattccgggcctggacggacttcctggacga
gctggaacccctggggataagggagacatcggattccaaggtattccaggaatgcctggt
ctgatcggacccaaaggaccaaagggagatcggggcttccccggtctagacggtatgaaa
ggagagccgggtgcagtttcagagaagggacagaagggtgagcctggaatgcctggtgcc
agaggacctcaaggaccaccgggacgcgatggactcgatggagcgaagggtgagcctggt
agagctggaatcggtcgcgatggcttgcccggtctcaaaggagagcctggatctcctggc
aaagacgggatcccgggattgccaggcgaaaagggctttacaggtgtcccaggactgcta
ggtatcaagggtgatttgggttaccctggagaacctggattacccggaagagacggaata
gacggaagtcctggaccagaaggtgccgaaggtccagtaggattgcctggttaccctgga
gccgagggagaaaaaggttatcccggaataaatggtctcgacggttcgaagggagatact
ggcctggaaggcattcctggaccccccggtttaatcggagaggtaggagaaaagggtgac
cgaggacctccgggacctcagatgacgataaagggagataagggagaaccaggacgacaa
ggttacgatggcgttaagggagagatgggagagcaaggtatccctggctttgacggccca
gcaggagcgaaaggtgaccagggagttccagggcccatgggtattcccggagctccgggc
tacgagggtcaaaagggtgacactgggccaatgggacccgtcggacctgttggattaact
gtcaagggagagaaggggcttcatggtttgttgggtaagaacggacgtgacggacgcccg
ggcatacccggagagaaaggaaatcctggcgacgcaggtcgggatggaagtccaggaaaa
ccaggacctcccggaccaatcggtccccaaggacaaaagggagacatgggcccggtcggt
ttcgacggtattccaggagacgacggactcgaaggatcgccaggggcaactggaccaccc
ggagctagaggactcaagggagacactggtccccctggagcatacggagcacctggacaa
aagggagaacaaggattgcaaggtccgcctggatttgacggacggccaggagaaaaggga
gacatgggagccgacggattcaacggtgcccccggtgttcaaggtgaaaagggagacaaa
ggattccaaggattacctggagcacctggtgtcactggctacgaaggcatcaagggagag
agaggtgatgattgcatccagcctctaccaggtcccaagggagaacgaggccctccaggc
gcaaccggaattgttggaccaccgggagaaaagggagcccagggacgaatcggattccca
ggactaaagggagagaagggaagtccaggtttaaacggtattacgggtccagtcggacca
ccaggattgcccggacctcccggtcttcaagggatacagggagtacagggtcccatcgga
tacccgggacagaagggaaatcaaggagcggactgtcaagctacgcccgattatctaact
ggaattctccttgtcaagcacagccaaactcctattgtacctgtctgcgaaccaggacac
attaagctgtgggagggatacagtcttctatacctcgatggaaacgaaagagggcattca
caagatttaggctctgccggttcctgcataaggaaattctcaacgatgccattcctgttc
tgcgacgtcaacaacgtttgcaactacggtagccgtaatgatcgttcttactggctgtcg
acaaacagccctctgccgatgatgcctgtcgaggaaagtgccatcgaatcgtacatctct
aggtgcgtcgtttgtgaggttccagccaacgtgatcgcggtgcacagtcaatctctaagt
attccagagtgtcccgacagatggactagcctttggatcggttacagtttcataatgcat
acgggagccggagctcaaggtggaggacaatcgttagctagtccgggttcttgtcttgaa
gatttccgcgcgacaccgttcatcgagtgtaacggagctggaggtacttgtcagtacttt
tctaatgagtttagttactggatggtgacaatcgaggacatcgcgcagttcaaggaacca
gagaagcaaaccttgaaggcgggaaatctacgtacgcgaataagtcgttgcaaagtgtgt
ataaagaatacgtaa
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integrated database retrieval system
