Neodiprion lecontei (redheaded pine sawfly): 107223597
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Entry
107223597 CDS
T09006
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107223597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nlo03019
]
107223597
03012 Translation factors [BR:
nlo03012
]
107223597
Enzymes [BR:
nlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107223597
Messenger RNA biogenesis [BR:
nlo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107223597
Translation factors [BR:
nlo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107223597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
HA2_C
HA2_N
nSTAND3
AAA_22
ResIII
ATPase
NACHT
AAA_14
AAA_19
PhoH
Myosin_head
NPHP3_N
Sigma54_activat
NB-ARC
AAA_23
ABC_tran
ATPase_2
AAA_16
RsgA_GTPase
TsaE
Rad17
Motif
Other DBs
NCBI-GeneID:
107223597
NCBI-ProteinID:
XP_015518813
UniProt:
A0A6J0BXI7
LinkDB
All DBs
Position
1:34678880..34685174
Genome browser
AA seq
985 aa
AA seq
DB search
MSYRHGRGVRNAYGSYRQRENSDDINDGSSYNAGNRQSRGSAQGSRGRGRGGHPPWLKGK
EIGLYYKKKAQSSQQPTHAIRLNPHTERKIKNLLESMPNTNFRPASGTGMCDGIDSKLKA
RYDHINDSHFKKNFLEIVSGDIQQNLTKSMLAKSKLVQNDTYDKRAIEEHKERVASPGYQ
KMLKFREKLPAFKMRRQVLELIEKNQVVVISGETGCGKTTQVAQFILDDQIERGNGSVTK
IICTQPRRISAISVAERVATERAERLGCSVGFQIRLEKELCRDYASILFCTTGMLLQFLH
SNPALTDWSHLILDEIHERSTESDFIITLLKQIIPRRPNLKVILMSATLNSDQFSKYYNN
CPNIHIPGFTYPVQEYYLEDVLQFTRFKFPPPPEMPNNHRKHMKRYKNQQKKSDDFLDFI
QPYLRHIESERKYPQFVIDQLRNPVSEDLSLELIAELVHFICTNEGPGAILIFLPGMTDI
TKLTRMLLESGEYPSSRFIVYPLHSRLPTVDQKLVFERPPDRVRKIIIATSIAETSITIE
DVVFVIDSGKMKLNKFDTDNNIETLLPEPVSLANAKQRRGRAGRVQPGKCYHLYTKAREM
TMDEYPLPEMLRTRLEQVILQAKILQLGKITPFLASVIDPPNAKAVELSLQLLMTLNALD
EDEQLTPLGYHLAKIPLDPRTGKMIILGAIFSCVEPVFSIAASLTYKDAFYCPLGKEAEA
QKRKLELGLGQYSDHIALAEALRRFEEAKTRGSPGFFCRQYFLSWNTLKLLTDMKNQFAK
YLCEMNFLHSANPNDERANKNSNNLALVKALVCAGLFPNVAIVKSVRRHGASVVTPQDGK
VKLHPSSINEKCQSFPSPYLVYFTKQLSSAIYLHDTTSISPMGLIFAGPNSKIGEQNGKC
VMALPGALSFLCEPETAFIVQKLRAKLEWLLGYKITHPGTIKWDSDEGAVLKGMIELVSQ
GDEEMGLESRTYHVGFANETYSDSD
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatcgacatggacgcggagtaagaaatgcatacggttcatatcgtcaaagagag
aattccgacgatattaatgatggttccagctacaatgcaggaaatagacagagtcgcggg
tcagctcaggggagccgtggtagaggtcgcggcggtcatcccccatggctaaaaggaaaa
gagatcgggctttattacaagaaaaaagcacagagttcgcagcaaccgactcatgccatt
agattaaatccgcacactgaaagaaaaattaaaaacctgttagaatcgatgccaaatacg
aatttcaggccagcttctgggacgggaatgtgcgatggcattgatagcaagcttaaggct
aggtacgatcacataaatgactcacatttcaaaaaaaatttcctggaaattgtgtctggt
gatattcagcaaaatcttacaaagtctatgcttgctaaatcaaagcttgtccaaaacgat
acttacgacaagagagcaattgaggaacacaaagaaagggtcgcgtcgcctggttatcaa
aaaatgttaaagttcagggaaaaattacctgctttcaaaatgaggcggcaagtcttggag
ctcatagaaaagaatcaagttgtagtgataagtggtgaaactggttgtggcaaaacgacg
caggttgcccaattcattctagatgatcaaatcgagagaggaaatggaagtgtcacaaaa
attatttgtactcaaccaaggagaatttcagctatatccgtagctgaacgagtcgctaca
gagagagcagaaaggcttggatgttccgttggctttcaaattagacttgagaaagagttg
tgcagagattatgcgagcatattgttctgtactacaggcatgttattacaatttctgcat
agcaacccagcgttaactgattggtctcatttaattcttgatgaaattcatgaaaggagc
acggaaagtgactttattattacattgttgaaacagatcattccacggagacccaatctc
aaagtgattttgatgagcgctactctgaattctgaccagttttcaaagtattacaataac
tgtccgaatattcatataccaggttttacatatcctgttcaagaatattatttggaagac
gtactccagtttactcgtttcaaattccctcctcctcctgagatgccaaataatcacaga
aagcacatgaagaggtataagaatcagcaaaaaaaatctgatgatttcttagattttatt
caaccatatttgcggcatatcgagtctgagagaaaatatccgcaatttgttatcgatcaa
cttagaaatccagtgagtgaagatttgtcacttgaacttattgcggaactggttcacttt
atatgtacaaacgaaggtcctggtgctattttgatatttttaccaggaatgactgatatt
acaaagttaacgagaatgctgcttgaatctggagaatacccatcaagtaggtttatagtt
taccctttgcattcacgcctgccaacagtggatcagaaacttgtatttgaaagacctccg
gatcgcgtgagaaagataataatagcaacatcaattgctgaaacgtccataacaatagaa
gatgttgtgtttgttatcgattctggtaaaatgaaactgaataaatttgacaccgataac
aatatagaaacgctattgccagagcctgtctctttggccaatgccaaacaaaggcgtgga
agggctggaagagttcaacctggcaaatgttatcatttatatacaaaggccagagaaatg
acaatggacgagtatcccttaccagaaatgttacgaacgagattagaacaagttatactt
caggcgaaaattttacagcttggtaaaataacgccgtttttagcaagcgtaatagatcct
ccaaatgcaaaagctgtcgaactttctcttcagctactcatgactctgaatgcccttgat
gaagacgaacagttaacacctctaggctatcatttggcaaaaataccacttgaccccaga
acgggaaaaatgataatattgggagcaattttttcatgtgtcgagccagtattttcaata
gctgccagtctgacttacaaggacgcgttttattgtcctttggggaaagaggctgaggct
caaaaacggaaattagaactaggtttaggtcagtacagcgatcacattgcacttgcagag
gctcttaggcggtttgaagaagcaaaaaccagagggtctccgggattcttttgtagacag
tattttctttcatggaacacgctcaagcttttaacagacatgaagaatcagttcgccaag
tatctgtgtgagatgaactttcttcacagtgcaaatcctaatgatgaacgtgcgaacaaa
aattcaaataacttggcactggttaaagcgctggtttgtgccggacttttcccgaacgtt
gctattgttaagtcagtcagaagacacggtgcaagcgttgttactccccaagacggcaaa
gtcaagctgcacccgtcaagtataaatgaaaaatgtcaatcctttcccagcccttatttg
gtttacttcaccaagcagttatcctcagctatttatctacatgacactacgagtattagt
cctatgggtttgatattcgctggtccaaatagtaaaataggagaacagaatggaaaatgt
gttatggcactaccaggtgccctcagctttttatgtgaaccggaaactgcgttcattgtt
cagaaattacgcgctaagttggaatggttgctgggatataaaatcactcacccagggacg
ataaagtgggacagtgacgaaggggcggtcttgaaaggtatgatcgagcttgtatcgcaa
ggtgatgaggagatggggctagaatctcgtacgtaccacgtgggatttgccaatgagaca
tactcagattctgattga
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