Neodiprion lecontei (redheaded pine sawfly): 107223704
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Entry
107223704 CDS
T09006
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107223704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nlo03021
]
107223704
03019 Messenger RNA biogenesis [BR:
nlo03019
]
107223704
Transcription machinery [BR:
nlo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107223704
Messenger RNA biogenesis [BR:
nlo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
107223704
U7-dependent histone pre-mRNA processing factors
107223704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
DUF7879
Motif
Other DBs
NCBI-GeneID:
107223704
NCBI-ProteinID:
XP_015518964
UniProt:
A0A6J0BXD8
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All DBs
Position
2:29149089..29159373
Genome browser
AA seq
1113 aa
AA seq
DB search
MDPRLHRRQESEKKGSSDLVVEWLNDASMSTSESVKLTNLAKVNEFLIHKEPKLLDLYLD
ETLQFSLDRSSEVRKLIAGFLEEAGCKQPDLIPRLVQTLARLVGDDASAVIKRALRAAGR
ILRATLKWISSVAIITTDMELAWTQLSNLKVAIINMIDSDNDGIRTQAVKFLEGVVLLQT
YPDPDAPKKPDDFSLEDIPLTLKIARRRKLEEEANHVMDLLIKFHGSPHVSSVNLMTCMG
SLALIAKTRPQFMRQVIQALQLLQHDLPPTLSDSQVTSVQKQLKLTLLGLLKHPASIEFA
GTMARQLNQLGAREQEIMKAYPKVEDIRKMKKRQQETAAASAAKRAKLEAAIAVEEPEQQ
PMEIESVKPPELIELSENFISDRLSVEIATELVMDSMAWVPDVMTSVFQREYQPTSTTDI
NVQRQTIARLLAVQIKQAKAKRVKRETKEEDAVMEDLIKNPTITVAEAKRERKREKDREK
EKEAKASLEAHEKSLKMAKNRLKTLKLSEITKPLQRETKEKMLLMAVGRILGAERIAVLG
GVAPVRSKILTTLAATFNPYIREAVLRYITEDMRCRLDLALGWLYEEYALLQGFQRRTTL
TSKPQEAPHQAYNFLLCTLVSAIDLVPGKDRDVLLSRLYLEAPLITEDAVEALKLVSSDE
TRGLAPLELLKEMVIRRPTKQLVFLNVLLCHTGHENNTIREAAIEFVVQLYSRPELAKLI
EEYAVLYLGFLRLPNPPEIVFGQDRGRPQIDDQWSESTTRACLGLYLALLSEHQDLIYEL
ARVYTSMGADVKRIILRLVEGPVRLLGMSSPQLLSLVENCPKGAETLVTRVIHILTEKSA
PSAELVAKVRELYQTRVSDVRFLIPVLNGLTKKEVIAALPKLIKLNPIVVKEVFNRLLGT
HNNDSGIPHMSPITPAELLIALHTIDTSKAELKTVIKATSLCFAEKQVYTQETVAVVMQH
LMEMTPLPTLLMRTVIQSLALYPRLSGFVMNILQRLILKQVWKQHKVWEGFVKCCERTQP
QSFSVILQLPPAQLAEALKMSPGLKAPLLAHVESFAENQKAHIPQSVMDVIQGKMLPVVA
DEFDIAPPGEYPLELKSEPMDTDPSEPAPPGLD
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atggacccacgcttacacagaagacaagagtctgaaaaaaagggctcgagcgacttggtc
gtagaatggcttaatgatgcttctatgagcacaagcgaatccgtaaaattaaccaatttg
gccaaagttaatgagtttttgatacacaaggaaccaaagttgctggatctatacttggac
gaaacgttgcaattctctttagataggagtagcgaagttcgaaaacttatcgcaggattt
ttggaagaagctgggtgtaaacaacctgacctgattcctcgattagtccaaacacttgca
agattagttggagatgatgcatcagctgtgatcaaacgggcgcttagagcagcgggaaga
attcttagggcaacattgaaatggatatcaagtgttgcgattattacaacagacatggaa
ctcgcttggacacagctgagcaatctgaaggttgcgataataaatatgatcgacagtgac
aatgatggaatcaggacgcaggcagtaaagttcctggaaggagtcgttttgctgcaaaca
tatccagatcctgacgctccaaaaaagccggatgacttctccttagaagatattccatta
acactaaaaatagctcggagaagaaaacttgaggaggaggcaaaccatgttatggatttg
ttgattaaatttcatggttctccacacgttagtagcgtcaatttgatgacttgtatgggg
tccttggcattgattgctaaaactaggcctcagtttatgcgtcaagtaattcaggcctta
caactcctacaacatgatctaccaccaacgctgtccgattcacaagtaacgagtgtccag
aagcaacttaagctcacgctattgggattgctaaaacaccctgcaagcatagagttcgca
ggaacgatggcaagacaattgaaccagctcggggcaagagagcaagaaatcatgaaggcc
tatccaaaagtcgaggatattcgtaagatgaaaaaacggcaacaggaaacagcggcagca
tctgcagccaaacgtgcgaaattggaggctgcaattgcagttgaagagcctgagcagcaa
ccgatggaaattgaatccgtgaagcctcctgaattgattgagctttccgaaaattttatc
agtgaccgtctaagtgtggaaattgccacagaactagttatggatagtatggcttgggtg
ccagatgtaatgacgtcagtgttccaacgagaatatcagccgacatccacaactgatata
aacgtgcaacgtcaaactatcgccaggctactagccgtacagataaagcaagctaaggcc
aaaagggttaagagagaaacgaaagaggaagatgcggtaatggaggacctaataaaaaat
ccaacaatcactgtagccgaggcaaaacgtgaaagaaaacgagaaaaggacagggagaaa
gagaaagaagctaaggcttcattggaggcacacgaaaagtcgcttaaaatggcgaaaaat
cgtttgaaaacgctgaagctatccgaaattacaaaacctcttcaaagagagactaaagag
aaaatgctccttatggctgtaggcagaattctcggagctgagaggatcgctgtactcggt
ggagtggcaccagtcaggtccaagatattgacgaccctagctgctacgttcaacccatac
ataagggaagctgtgctccgctatataactgaggacatgaggtgtcggcttgatttggcc
ctcggctggctctatgaggagtacgctttgcttcagggattccaaaggcgtacaacactg
acgagtaaaccgcaggaagctcctcatcaagcctacaactttttactctgcactttagtt
tctgcaatcgacttggtaccagggaaagatcgcgatgtgttgttgtcgcggttgtatctg
gaagctcctctaatcacagaagatgccgtggaagctttaaaactggtctcgtccgatgaa
acgagaggactcgcacctttggaattactcaaggaaatggttattcggagaccgacaaag
cagctagtatttttgaatgtattactgtgtcatacaggacatgaaaataatactattcgt
gaagcagcgatagagtttgttgttcaattatatagccggccagagctggccaagttgata
gaagaatatgcagtgctgtatttaggttttctacgattaccaaacccacctgaaattgta
ttcggacaggatagaggaaggccgcagatcgacgatcagtggagtgaatcaacaacccga
gcttgtctaggattgtacctagcattactgtcggaacaccaagatcttatttacgaactc
gccagggtttatacctcaatgggagctgatgtcaaacgtatcatcttacgcttggttgaa
ggaccggtgagactcttgggaatgagtagtccacagctattgtcccttgtcgaaaactgt
ccaaaaggggcggaaaccctggttacgcgagttattcatatccttacggaaaaatccgcg
cctagtgcagaactggtggccaaagtacgtgaactttatcaaacaagagtgtctgatgtt
agatttttgatacctgttcttaacggcttgactaaaaaagaagttatcgccgctcttccc
aaacttatcaagttgaacccgatcgtcgtgaaagaggtattcaatagactccttggaacc
cataataatgacagtggtataccacacatgtcgccaataacgccagcagaacttctcatc
gctttacatactatagatacgagcaaagcagaattaaaaacagtcataaaggcaacttct
ttatgctttgctgagaaacaagtctatacacaagaaacggtggcagtagtgatgcagcat
cttatggaaatgacgcccctgccgacgcttctgatgcgaacagttattcaaagtctagct
ttgtaccctagactgagcggatttgtaatgaacattttacaacgattaattctgaaacag
gtctggaaacagcacaaagtttgggaaggatttgtgaaatgctgtgagcgaactcagccc
cagagtttttcagttatcttacaattaccgcctgcccaattggcagaggcattgaaaatg
tctccgggattgaaggcacctctacttgcacatgttgaatcgtttgccgagaatcagaaa
gctcacattccacagtctgtaatggatgtgatccagggaaaaatgttgcctgttgttgcg
gatgaatttgacattgcccctcctggtgagtaccccttagaactcaaatcagagcccatg
gacactgacccttcggaaccagcgccacctggacttgactag
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integrated database retrieval system
