Neodiprion lecontei (redheaded pine sawfly): 107223809
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Entry
107223809 CDS
T09006
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nlo03016
]
107223809
Enzymes [BR:
nlo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
107223809
Transfer RNA biogenesis [BR:
nlo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
107223809
Prokaryotic type
tRNA splicing ligases
107223809
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
107223809
NCBI-ProteinID:
XP_015519104
UniProt:
A0A6J0BXV7
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All DBs
Position
5:9568662..9571691
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AA seq
506 aa
AA seq
DB search
MVVRQYQEELKYLEKINDYCWRIKKGFQPNMNVEGIFYVNNTLERLMLEELRNSCRPGMV
GGFLPGVKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMNDPKSIVSPGGVGFD
INCGVRLLRTNLFEKDVQPIKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVEEIYD
KWAASKMGIEDKGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIH
STEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKQFHMSPDDLDMHVIYDVSHNIAKVE
EHIVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEEGM
KETFGSTCHGAGRALSRAKARRNLDYKDVLAKLEQSGISIRVASPNLVMEEAPESYKNVT
DVVNTCHAAGISRKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtccgtcagtatcaggaagaattgaagtacctagaaaaaatcaacgattactgc
tggagaattaaaaaggggtttcagccaaatatgaatgtcgaaggtatattctatgtaaac
aataccctggaacgtctaatgctagaagaattacgcaattcctgccgacctggtatggta
ggtggatttctaccaggagtaaagcaaattgctaatgtggctgctttacctggcattgta
gggaggtctgtcggattaccagatgttcattccggatatggatttgccatcggcaatatg
gcggcatttgacatgaatgatcccaaatcaatagtctcccctggaggtgtaggatttgac
ataaactgtggcgtaaggctccttaggactaatttatttgagaaggatgtccagcctata
aaagaacaactagctcaaagcatgttcgatcacatacctgttggtgtcggatcaaaagga
atcatacccatgaatgccagggatttggaagaggccttagaaatgggaatggattggtct
cttcgtgaaggctatatttgggcagaggataaagaacactgcgaggaatatggtcgtatg
ctcaatgcagatccttcaaaagtgtcaatgagagctaagaaacgtggtctgccacagttg
ggtacgctaggtgcaggaaaccattatgcggaaattcaagtagtcgaagaaatctatgat
aaatgggcagctagcaaaatgggtattgaagacaaaggacaagtttgtgtcatgattcat
tctggcagcagaggatttggacatcaagttgctactgatgctcttgtacaaatggagaag
gctatgaagcgcgataacatcgaaacaaacgatcggcagttggcatgtgcacatattcat
tcaactgagggacaagactatttaaagtcaatggctgcagcagcaaattttgcttgggtt
aatcgtagttctatgacgtttcttagtagacaggcgttcgcaaaacagtttcacatgtca
cctgatgacttggacatgcatgtaatttatgatgtatcccataacattgccaaagttgaa
gaacacattgttgatggcaaacagaaaactttactagttcatagaaagggttcaacacgt
gctttcccacctcaccatccgctcattccagttgattatcagttgacgggacaacctgta
ttgatcggaggtaccatggggacatgtagttatgttctcacaggaactgaagaaggcatg
aaagaaacttttgggtcaacatgtcacggagcgggccgcgcattatcgcgtgcaaaggca
cgacgaaacttggattacaaagacgtattagccaaactggaacaatctggcatatcgatc
agggttgcatcaccgaatttggtcatggaggaggctcctgaatcttataaaaatgtgact
gatgtagttaacacatgtcacgcggccggaatatcccgaaaatgcattaaactgaggcct
attgctgtcataaaagggtaa
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