Neodiprion lecontei (redheaded pine sawfly): 107224136
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Entry
107224136 CDS
T09006
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107224136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nlo03019
]
107224136
03041 Spliceosome [BR:
nlo03041
]
107224136
Messenger RNA biogenesis [BR:
nlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107224136
Spliceosome [BR:
nlo03041
]
Complex B
Other components
Prp19-related factors
107224136
Complex C
107224136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
Mad3_BUB1_I
RPN7
ARM_TT21_C
TPR_10
DHR-2_Lobe_A
Terminase_6C
PPR
Microp_apicomplexa_6
Motif
Other DBs
NCBI-GeneID:
107224136
NCBI-ProteinID:
XP_015519566
UniProt:
A0A6J0BXA3
LinkDB
All DBs
Position
5:23217395..23221532
Genome browser
AA seq
852 aa
AA seq
DB search
MMQREDSDGNSYIFNEEDLPYEEEILRNPYSVKHWQRYIDHLKSTKSVNLNIVYERALKE
LPGSYKLWYNYLRQRVKQLKGRCVTDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTDQ
CYITRTRQVFDRSLRALPITQHHRVWPLYIGFLKKHNVYETAVRVFRRYLKLAPEDAEEY
IEYLISTGRLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPTKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVSTVRDFTQVFDAYAQFE
ELSLSKRMEDAAKNPNPTEEDDIELELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHK
RVMLYEGQPHEIINTYTEAVQTVLPQQAVGKLHTLWVAFAKFYEENGQIADARVVFDKAT
HVAYTKVDDLASVWCEWAEMEIRHDNCKEALKLMHKATTMPSRKVAYHDETETVQMRLYK
SLKVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYE
KGIALFKWPNVYDIWNTYLTKFLKRYEGTKLERTRDLFEQCLEHCPPKYAKALYLLYAKL
EEEHGLARHAMSVYERATSAVLPEERFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNEE
NTREMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVTSNFWQVWKEFEVRHGNEDTMRE
MLRIKRSVQAMYNTQVNMMSAQMLNSATNLSIDDSAGTGDAMRLLDNKIPSTSTDAAAQP
GFKDNIKFVRGVTEGAGKSERQVNNPDEIDIDMDDDSEDEEKEIEEDVPVEKQAIPSKVF
GSLKATKEDEDD
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagcgagaggattctgatgggaatagttacatcttcaatgaggaggatctgcct
tacgaggaggaaatcctgcggaatccttactctgttaagcactggcaacgctacattgat
cacttgaagagcacgaagagcgttaacctcaatattgtctatgaacgagccttgaaggag
ctgccgggaagctacaagttatggtataactacttgcgtcagagggtaaaacagctgaag
ggacgctgcgtgacagacccgctctacgaggatgtaaacaatgcttttgaacgagcactt
gtattcatgcacaaaatgcctcgaatctggatggactattgcaccctgatgaccgatcag
tgttacatcacgaggacccgtcaggtattcgatcgctcgcttcgggctcttcccatcacg
cagcatcatcgtgtctggccactttacattggcttcctcaagaaacacaatgtatatgaa
acagctgtacgcgtcttcaggagatatctgaagttagctccagaagatgcagaggaatac
atagagtatttgatatcgacgggaagactggacgaagctgcggtcaaattagcccaaatc
gtaaaccaggacgactttgtgtcaaagcatggtaaatcgaaccaccagctgtggaacgag
ctctgcgaccttatatcaaagaatcctaccaaaataaaatccttgaacgttgatgcaata
atcagaggtggattgaggcgatatactgatcagttgggtccactgtggaattcattggct
gattattacgttcgtagtggcctttttgagcgcgccagagatatctacgaagaagcaatc
cagacagtttccactgtcagggactttacccaagtgtttgatgcgtatgcccagtttgag
gaactcagcctcagcaagaggatggaggatgctgccaaaaatcccaatccaaccgaagaa
gatgacattgaactcgaacttcgattagcaagatttgaacacctcatggagagaagactg
ttgttgctgaacagtgtgctgcttaggcaaaatccgcacaacgttcaagaatggcacaaa
cgagtcatgctctatgaggggcaacctcatgagataatcaacacgtatacagaggctgtt
caaacggtgttgccacaacaggcagttggcaagttgcacacactgtgggttgcgtttgcc
aaattctatgaagagaatggacagatcgcagatgccagagttgttttcgataaagcgacg
cacgtcgcatacacgaaggttgatgatcttgcttccgtttggtgcgagtgggccgaaatg
gagatcaggcacgacaattgcaaagaggccttgaagcttatgcacaaggcaaccaccatg
ccctcacgcaaagttgcgtatcacgacgagactgagaccgttcaaatgagattgtacaag
tcacttaaagtctggtccatgtacgctgatctcgaggagagctttggtacattcaagacg
tgcaaggctgtgtatgacaagatcatagatctcaaaattgcgacgccgcagatcatcata
aactatggtctatttttggaggagaataactatttcgaggaagccttcagggcctacgaa
aagggtattgctctgtttaagtggccaaatgtatatgacatatggaacacgtacctcacc
aaattcctgaaaagatacgagggaacgaaattggaaagaactcgcgatctgtttgaacaa
tgcttggaacattgcccaccaaagtatgcgaaggctctttatttgctgtacgcgaaactg
gaagaggaacatggcttagcaaggcacgcgatgtccgtatacgagcgagcgactagcgct
gttttaccagaagaaagatttgagatgttcaacatatacataaagaaagccgctgatata
tacggagtgccgaagacgcggcagatctatgaaaaggcgatcgaagttctgaatgaagaa
aatacgcgggagatgtgtctccggtttgcagagatggaaactaagctcggtgaagtcgat
cgagcgagggcgatttacgctcactgcagtcaaatatgcgatccccgggtaacgtctaat
ttctggcaagtttggaaagagtttgaagtccgccacggcaatgaggacacgatgcgggaa
atgctgcgaatcaagagaagcgtgcaagcaatgtacaacacccaagtaaacatgatgtca
gcacagatgcttaacagtgcgacaaatctctctatcgatgacagtgctggcaccggtgac
gctatgcgacttttggacaacaagataccctcaaccagtacagatgctgctgcgcaaccc
ggattcaaagataatatcaaatttgtacgaggagtaactgaaggagctggaaagtccgaa
cgtcaagtgaacaatccagatgaaatagacattgacatggacgacgacagtgaagatgag
gagaaagaaattgaagaggatgtaccggtagagaaacaagccattccatcgaaagttttt
ggaagcctcaaggccaccaaagaggacgaggacgactaa
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