Neodiprion lecontei (redheaded pine sawfly): 107224335
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Entry
107224335 CDS
T09006
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107224335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nlo03019
]
107224335
Messenger RNA biogenesis [BR:
nlo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
107224335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
DUF7587
ACR_tran
Motif
Other DBs
NCBI-GeneID:
107224335
NCBI-ProteinID:
XP_015519832
UniProt:
A0A6J0BZZ0
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Position
4:36949181..36953351
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AA seq
908 aa
AA seq
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MSTDTSIEPGHKSRNDSEPQDESANAQGVEVIEILPGFTNFDDFVNVGFEALKTGIKAAN
GLPSGEKYDYYKCFPTFRNIINEEINNVLVCMQNITEGVGVRGNIRRRDIEEKFELLIEA
NDILLERAGICMDEASGILRNPDVEFVVSQSNSTAVSGSWNNLSFHSKTQQTQPANKAQA
ICLLTAKNIQRPQLKFEDKIDNSIKPWQPRIKDKPNSLKPLALYVEEDEDGEFFSHPYEF
ELDRFEAPEHQLESRVPVEYKHIDDTSLIVIEKPEDIKILLDDLSKYTEIAVDLEHHSYR
SFQGITCLMQISTKDTDYLVDTLSLRSELHQLNEIFTKPSILKVFHGAGSDIEWLQRDLS
LYIVNMFDTHIAAKQLNLPYLSLAHLMKRYCDIDPNKHFQLADWRVRPLPEELMKYARED
THYLLYIKDNLMNALLEQANGQSNILKAVYDRSTDVCKKIYRKPVWSEEKCMNLYRKSKK
MFNNRQLYALRELHKWRDATGRAEDDSTGYVLPNHMLLNIAESLPREMQGILACCNPIPP
LVRQNALSLHKIILKAKEQPMIKPILEDDIRQRMTQRNQVTDLETTLLYSPHDMPHDMEI
RADLPCLLDLNSSSEINVTEHTIPHTVTVFDSPPQSEDENTAGHITRKKRRTPFISPFER
YKRVLPMVAAEEAKERERQEKEEAERIKLVENSENEIAESKNRVYKHFKDVVGAVTNPIS
VQQSAGSSSNQSIDSKQFGPDHKTLSQMQGRKRKRQSNYHDDTKLTESQDDLSTPLPFLH
KKFTQNYRRDKRELNSPTQGVKKQKKSYHDTGHSSFTEDTELSANNELSVKSLRNNKKKS
KQENKRNMKEKGILPRESFDYKNVDFSSFQGGSRAHNQIPFQAQNKKKNARGNRGKGNRG
NKKQKWNC
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccgacacgagtattgagcctggtcacaaatctcgtaatgattccgaaccacag
gatgaatccgcaaatgctcagggtgtggaggtcatcgaaatcctaccagggttcacaaat
tttgatgatttcgttaatgttggatttgaagcactaaaaaccggcataaaggccgccaac
ggcttacccagtggtgaaaaatatgactactacaaatgttttccaacctttcgtaatatc
attaatgaggagatcaacaacgttttggtctgtatgcaaaacattacagaaggtgtggga
gtgagaggcaatatcagacggcgtgacatagaagagaagtttgagcttttgattgaagct
aatgatattttattagagcgagcaggaatatgtatggatgaggcctcaggaattctgcga
aacccagatgtcgaatttgttgtatcgcaaagtaactcgacagctgtaagcggcagctgg
aacaatctgtccttccattcaaaaactcagcaaactcaaccggcaaataaggctcaagcg
atttgtttactgacggcaaagaatatccagcgaccgcagttgaagtttgaagataaaatt
gataacagcattaaaccttggcaacctagaataaaggataaaccaaactcattgaagcca
ctcgctctgtatgtcgaagaagatgaagatggagaatttttcagccatccatacgaattt
gaacttgataggtttgaagcacctgagcatcaactggagtctcgtgttcctgttgaatat
aaacatatagacgacacttctttaatcgtgattgaaaaacctgaagatataaaaatacta
ttggatgatttgagtaaatacactgagattgcagttgacttggagcatcattcttataga
tcattccaaggcataacatgtctaatgcaaatatcaaccaaagatacggactatcttgtc
gacacattatcacttagatctgagctgcaccagcttaatgagatatttacgaaaccgtcc
attcttaaggtatttcacggcgctggcagtgacatcgagtggctgcaaagagatttgtct
ttgtacattgtaaatatgtttgatactcatattgcggccaaacagcttaatttgccatac
ctaagtttggcacatcttatgaagcggtactgtgatattgatccgaacaaacatttccaa
ctggccgattggcgagtcaggcctctacctgaggagctgatgaaatatgcaagggaagat
actcactacttgttgtatattaaagataatcttatgaatgcattgctggaacaggccaat
ggccaaagcaatatcttgaaggcagtgtatgatcgaagtacagacgtatgcaaaaagata
tacagaaaaccagtctggtcggaggaaaagtgtatgaatctgtatcgaaagagcaagaaa
atgttcaacaataggcaattgtacgctcttagagaactgcataagtggcgagatgctact
ggcagggcagaggacgacagtactggttacgttctaccaaatcacatgctgttgaatatc
gctgagagtttaccccgtgaaatgcagggaattctggcatgttgtaaccccataccccct
ctggtcagacaaaacgcattatcgcttcataaaataatcttgaaagcaaaggaacaacca
atgatcaaacctatcctagaagatgatatccgacaacgtatgacgcagcgaaatcaagtt
acagatttagaaactacacttctatattcacctcatgatatgccacatgatatggagatc
agagccgatttaccttgtttgttggacctaaacagctcttcagaaattaatgttaccgaa
cacacgattcctcatactgtcactgtatttgacagccccccacaatcggaggatgaaaac
actgcggggcacattacgagaaaaaaaagacgaacgccattcatcagtccttttgaacgg
tataagcgtgtattacccatggtagctgcagaagaggcaaaagaaagagagagacaagaa
aaagaagaagctgaaagaataaaattggtagaaaatagtgaaaacgaaatagcagagagt
aaaaacagagtttataaacacttcaaagatgtggttggagcagttactaatccaatcagc
gtacagcaatccgctggtagcagttcgaatcagtctattgattctaaacagttcgggcct
gaccacaaaactttgagccagatgcagggaagaaaacgtaaacgacaatctaattatcat
gatgatactaaactgacagagtcgcaagatgatttatcgacaccgctacctttcctgcat
aaaaaattcactcaaaattatagacgagataaacgagagttgaattcacccacacagggt
gtaaagaaacaaaagaaatcataccacgatacagggcacagttctttcactgaagatacg
gaactttctgcaaataatgaattgtctgtcaaatcactcagaaacaataagaagaagagt
aaacaggaaaataagagaaatatgaaagagaaaggtattctacctagagaatcatttgat
tacaaaaatgtcgatttcagtagttttcaaggaggcagccgcgcgcacaatcagattcct
ttccaagctcagaacaagaaaaagaatgcacgaggaaatcgagggaaaggaaatagaggt
aataagaagcaaaaatggaactgctaa
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