Neodiprion lecontei (redheaded pine sawfly): 107224957
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Entry
107224957 CDS
T09006
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107224957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nlo03041
]
107224957
03009 Ribosome biogenesis [BR:
nlo03009
]
107224957
Enzymes [BR:
nlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107224957
Spliceosome [BR:
nlo03041
]
Complex A
U2 snRNP components
U2 related factors
107224957
Complex B
107224957
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
107224957
Ribosome biogenesis [BR:
nlo03009
]
Eukaryotic type
90S particles
Helicases
107224957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
AAA_22
SRP54
nSTAND3
Flavi_DEAD
AAA_25
Motif
Other DBs
NCBI-GeneID:
107224957
NCBI-ProteinID:
XP_015520713
EnsemblRapid:
ENSNLCG00000011274
UniProt:
A0A6J0C2L0
LinkDB
All DBs
Position
5:26640101..26647536
Genome browser
AA seq
716 aa
AA seq
DB search
MSKRRIEVVDPYIKRKKDGTVANNMPTSTAAKNQVQHNPYTGLPYTPRYHEFYKKRITLP
VFEYRTDFMRLLALHQCIVLVGETGSGKTTQIPQWCVEYSRSMGPKAVACTQPRRVAAMS
VAQRVSEEMDVALGQEVGYSIRFEDCSSANTVLKYMTDGMLLREGMSDPMLEAYQVILLD
EAHERTLATDLLMGVLKEVVKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTHPVE
IFYTPEPERDYLEAAIRTVIQIHMCEEVAGDLLLFLTGQEEIEEACKRIKREMDNLGPEV
GELKCIPLYSTLPPNLQQRIFEPAPPTKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPG
FAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTERAYKNEMQDNTYP
EILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTDLGA
VMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNEAKKAADDSKMRFAHI
DGDHLTLLNVYHAFKQNMEDPQWCYEHFVNYRSLKSGDNVRQQLSRIMDRFSLKRTSTDF
TSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQVVQLHPSSCLDHKPEWVIYNEFV
LTTKNYIRTVTDIKPDWLLKIAPQYYDLQNFPQCEAKRQLEGIQTRLDSKQYQEGF
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagcggaggattgaagtggtggatccatatatcaaacgaaagaaagatggaaca
gtcgccaataacatgccaacttcaacggcggccaaaaatcaagttcagcataacccatat
accggtcttccatatacgccacgttatcatgaattttataagaagagaataactcttcca
gtattcgagtatagaacagacttcatgaggctcttagcgctgcatcaatgcattgtctta
gttggtgaaactggatctggtaaaactactcagataccgcaatggtgtgtcgaatactca
agatctatgggtccgaaagctgtggcttgtactcagccgagaagagtagctgccatgtca
gttgcccagagggtgtcagaagaaatggatgtcgctttgggtcaagaggtaggctacagc
atccgttttgaggactgcagctctgcaaatactgtgcttaagtacatgacggatggtatg
ctgcttcgagaagggatgtctgaccccatgctcgaagcgtatcaagtaatcttattagat
gaggctcatgaaagaacactggcgacagatttattgatgggagttttaaaagaagttgtg
aaacagcgtccagatctgaaactggttataatgagtgcgactctagacgcaggaaaattt
caacagtactttgataatgcaccattgatgaacgttcctggtcgaacgcatcctgtagag
atattttacacaccagaaccagaaagggattatttggaggctgcaattagaacagtaata
cagattcacatgtgcgaagaagtggctggcgaccttctcttatttttgactggacaggag
gagatcgaggaagcttgtaagagaatcaagagagaaatggacaatctaggacctgaagtt
ggagagctgaaatgcatccctttatattctacacttccaccgaatcttcagcaaagaata
ttcgaacccgctccacctactaaacccaacggagctattggaagaaaagttgtagtgtcc
acaaatattgcagaaacttcattgaccattgatggtgttgtttttgtcattgatccaggg
tttgcgaagcaaaaggtctataatccgagaattcgcgtagaatctttgttggtatcgcca
atcagtaaagcatctgcgcaacagcgagctggtagagcaggtcgaactcgtccagggaaa
tgttttcggctttatacagaaagagcatacaaaaatgagatgcaggacaacacgtatcca
gaaattcttcgttcaaatctcggcagtgttgttttgcaattgaaaaagcttggaattgat
gatctggttcattttgacttcatggatcctccagcgcctgaaacacttatgagagcactg
gagctgctcaactacttggcggcgcttgatgacgacggaaatttaacagacctaggtgca
gttatggctgaatttccgctcgaccctcagctggcaaaaatgttaatagcttcatgtaac
cataactgcagtaatgaaatactcagcatcaccgcgatgctttcagtcccacagtgtttt
gtgagaccaaacgaggctaagaaagctgcagatgactcaaaaatgcggttcgcgcatatc
gatggcgatcatctgactcttcttaatgtatatcatgcctttaaacagaatatggaagat
ccgcaatggtgttatgagcattttgtgaactatcgatcacttaagagtggagataacgtt
agacagcaattaagtaggatcatggacaggttcagtttaaaacgtacgtcaaccgatttc
acgtccaaagactattacataaacatcagaaaagcattggtcaacggattcttcatgcag
gttgcacatttagaaaggacgggacactatcttacaataaaagacaatcaggttgtgcaa
ttacatccgagcagttgccttgaccataaacctgagtgggtaatctacaacgaattcgtg
cttacgacaaaaaattacatcaggacagtaacagacataaaacccgattggttacttaaa
atcgcaccccaatactacgatttgcagaacttccctcaatgcgaagctaaaagacagctt
gaaggtattcaaacgcgactagattcgaaacagtatcaagaaggcttctaa
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