Neodiprion lecontei (redheaded pine sawfly): 107225310
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Entry
107225310 CDS
T09006
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107225310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nlo03041
]
107225310
Spliceosome [BR:
nlo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
107225310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_Gbeta
EIF3I
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_Aladin
ANAPC4_WD40
Beta-prop_EML
PRP4
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_WDR41
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_IFT140_1st
Ge1_WD40
Beta-prop_WDR19_1st
Beta-prop_Nup120_160
WD_LRWD1
Beta-prop_SCAP
WD40_RFWD3
WDR54
Motif
Other DBs
NCBI-GeneID:
107225310
NCBI-ProteinID:
XP_015521220
UniProt:
A0A6J0C407
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Position
6:complement(31359837..31363659)
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AA seq
527 aa
AA seq
DB search
MSDDEDLVYVKKQKTVHYGSLEEAERARLTATSAESSDEERDHNRSPSDTPTTAAALGNV
HISNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDSEVKNNLRQLGEPICLFGEGP
ADRRSRLRELLASLGEDAIKKKHEDEERPLHQTERDAESTWYHEGPDSLQIARSWIASYS
LPRARDRLEKSREELELPGATRTARRQELLKKLQALSIYCSQIGDSRPISFCQFSPNSKL
LATSSWSGLCKIWSVPECSIARTLRGHTCNVSCIVFHPNATLTEDMLGENASPTCVLASC
ASDGSVKLWGGGKSEEPLAEVEGHEPHRVSRIAFHPSGRFLGTCCHDASWRLWDLEQQAE
VLHQEGHAKAVHCISFQCDGSVVATGGHDSFGRVWDLRTGRCIMFMEGHLKSIFGVDFSP
NGFHLATASEDNSCKIWDLRKRSCIYTIPAHTNLLSDVKYQRTEGQYLVTASYDNTAKIW
SNKTWQPLKTLPGHDGKVMCCDVSPDHKFIVTSSYDRTFKLWAPENM
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacgacgaggaccttgtttatgtaaaaaagcaaaaaactgtgcattatggatcc
cttgaggaagctgaacgtgcccggctcacagctacatctgcagaatcttcagatgaggaa
agagatcataataggagtccatcagatacgccaacaactgctgctgccctgggaaatgtg
cacatatcaaatgaatacatggaacttgaagatgagatgtctaaagacaggcaagctttg
ctcgaagaatttgagcggagaaaaaaagccaggcagattaatgtttccaccgatgattcg
gaagtgaaaaacaatctgcgccaattaggggaaccaatttgtttgtttggtgaaggccca
gcagacagaaggtccaggttgagagaattattggctagcttaggtgaagacgctattaaa
aaaaaacatgaggacgaggagcggccattgcatcagacagaacgagatgcggaatcaact
tggtaccacgaaggaccagattcccttcaaattgcccgctcgtggatagcatcgtattca
cttcccagggcaagagatcggcttgaaaaatctagagaagaattagagcttccaggggct
acacgtactgcacgtcggcaggaacttctgaaaaaattacaggctctcagcatttattgc
tcccaaattggagacagccgtcccatatcattttgccaattcagtccgaattcaaaatta
ctggcaacatcttcctggtctgggctttgcaaaatttggtctgtacctgaatgctcaatt
gccagaaccctcaggggccatacctgtaatgtaagttgtattgttttccatccgaatgca
acactcactgaagacatgctgggagaaaatgcgtcgcctacatgtgttctagcaagttgt
gcttcagacggaagtgttaagctgtggggtggaggcaaaagtgaagagccgttagcagaa
gttgaaggtcatgagccccatagagtatcaaggattgcatttcatccatcgggtcgcttt
ttaggaacctgttgccacgatgcttcttggcgactgtgggatctggaacaacaagctgaa
gttttgcatcaagagggtcatgccaaggcagtacattgtataagtttccaatgtgacggc
agcgttgttgctacgggaggccatgattcctttggcagagtttgggacctgagaacaggc
cgctgtatcatgtttatggagggtcatttgaaatctattttcggagttgatttttcgcct
aatggttttcacctggctactgcaagcgaggataattcgtgcaaaatatgggatttacga
aaaagatcgtgtatttacactataccggcacacaccaatttattatcagacgtgaagtat
cagcgtactgaagggcagtatttggtcacggcgtcgtatgacaatactgcgaaaatttgg
tccaacaaaacgtggcaaccgttgaagacattgccaggacatgatggcaaagtaatgtgc
tgcgacgtttctcctgaccacaaatttatagtcacaagctcatatgatagaacatttaag
ctctgggcacctgaaaacatgtga
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