Neodiprion lecontei (redheaded pine sawfly): 107225468
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Entry
107225468 CDS
T09006
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nlo03009
]
107225468
Ribosome biogenesis [BR:
nlo03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
107225468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
HEAT_GCN1
HEAT_EF3_N
Motif
Other DBs
NCBI-GeneID:
107225468
NCBI-ProteinID:
XP_015521438
UniProt:
A0A6J0C4G3
LinkDB
All DBs
Position
2:complement(6326828..6338053)
Genome browser
AA seq
2775 aa
AA seq
DB search
MKNKPTRHKESNTFKFKPFSERIADIDVDVFHRVSHRNEAESDEVETHFYQCLHKWSVLN
LTENYTNLKKELRGIVTLPQLLNSKEHVIDALLKYLRLKDTLCLQPILELVIAAARDLQK
EFYEYFPQFLTVIIDLLHTNDAEQLEYTFTTLAYLFKFLWRYLIKNVDAVFDLLLPLLAE
SKPTYINDFAAESFAFVVRKVKDKDAFLELLINALEKRPDGVSGCGKLLFQVIQGTTGQF
HSCAEQMLTLYIGSLKNESIDKQMLYSILQQVVQCLVNSIHPQKSEIFWNVSLRLADLFL
ENYEKSSGDTDELKTEKENALFLLHSLLLEAVNHRDGRMLVHPNQLINELVKALDFFENK
ETTVGGDKVIVKGLAKLSGSVLLAQNVKLTQEYSNKLVRKILAIRDIEILLSVVEQLISY
SSFETLVLPHFMTYSFQTGFNSNILRLFSKIITVKSPLCLNGTKLKEWTRYNLNIRNIPG
ESLNHMQNILTALNDNAPTEDSLRLLITLPHLSPVPKICEETLLEATKNIYGKLKTFVDI
NSDLKLDLLSFIFLLAIESVAHILQPNEFYEYITKHDINLSILIDKYSTVRSILCAVDLC
LSHIVDSEIGNNLINIDLFNSLNESLAPLLGSPYHKDRLVIAHIYSLFSNVKDILATNDQ
SDKNFLALPYLAEAEPSTVHCYRDKLLPLQGLAFERILLSNFDSKYLKFPIYCLFGNLYV
NFSLLWDPIMKLIASYAHKQCDSFWPIFISKLESAKTQGESETTSLLTFDCDVTSTLLFQ
VFDNEDKPDYNNYSLLLWKCMSLFSDFCEMKNRDLTGIFIDFVESNFFKSNSEDAKSWSI
KKHEGDNELANQIVQETEDDDEIDHEKATKNDLATNKISFDGKHKIKLLLAQMEIFSKVK
NPRTLYREADMYKIYLELLASKNSEVQKSALNCLFTYKHKYLVPYKEHLYNLIDEKSLKN
ELALFKIDKESNMIQDDHREALLPILMRIIYAKMVMRTGMRTGGKAGGLVRRTIVLRFLA
GTQEDEMMTFISMAFKLFHKYVPIASEEELNLNEMVRDVVNNLDLSNIIPPKRLQSSVNL
LAIVIEQFGGKMSSKLLPRLLGILICILAQVTGISHRSNDVHPGYMSSIRNLRTSCMNIL
SRFFSHYESYEWTESEIDALFAVAVFPWLEKLPIEGIHSPTALLKLFIAWSQNPRYYPLF
AKHFENNLTLTPLPYVIQLLLGPKTHGSVINAILEMIEKMLTLQDYGAIDNNVNQMDVDA
KFFPIILINNMLEVKQNSTRCRTDNINYGSALLLPHVPNILEYIKKKLNKSNKGVNKIEL
VVLSRISEFVEDSETCDTLLTLLLPILVKKATTGASEEIVVQLVSTIFNLMKIVEHPEKH
LRLIVPLTGAITAVSARKSLMRLYNIISEGSSEQHRDLMIRNCKLLVELNAWDSKWIDQP
DFDKRLEAFKEVNTLLEEDALTLEFGAAIIYNCFFFLKTEKDLALRDLSGQCLKTIAPKL
VRKYKDRHLEKNYLIDETILSIVRMGIRDKNEIVRNQSIALLGQLAMECSDVHPVLRDLH
PLSNKADPEVDVFENLQHLQLHRKARALLKFCSIAKTWTRSPNPKTLTQFILPLASSYLC
SESFVNKNSIVDAAIETVGTVCRLLPWHQYEVVLKYYLDKLRSSVEFQKQTIRIVVAILD
AFHYNLSKYKEPASSVIAIVNTEDVKEPDPLPSYDEGSVLDSIPDMDEKLDESLADDAKN
LDESEPKSGNNSQINIPAMQRELFLSQFAARRLVFGISKVLLPQLNRSIMARTQHENSHK
VNRKKTGFEREEEEIMRVPIALAVVKLLQKLPPGVLEENLPGILMKLCTFLKSRLDSVRR
ITRETMQKIMITLGPEYLRHLLKEMNNILTKGFQVHVLVYTIHAVLVSLKPYYKPLHINE
NLHSILSVCKVDLFGLTGEEKEIAGIVKNVSEAKSTKSFDIFHILAQFITESCLLDLVMP
LKNALIKTHSYKIIRKVVECLRQVVLGLADNTFIEINKMLTFLYGVISESIPDLLLATKP
KQVTEREAEIKARQKPDCLIIVPEPKNRMGVKAQAKTSSNTNAHIMVEFGLRLYHILLKR
DRISAPELESYLDPVVSILSDCLKSQHVKLTTLALQCLNWILKTDLPSVKTYVTEICSSM
FNILHKYAAAGLSKGDNFDLVTAAFKCMSVLVRDVKDFTINSEQLKILILYAEQDLHDYD
KQGTAFTLLRAILSRKLIIPEMHDVMEKVAKLSVTSELDHVRQQARSIFHIFLMEYPLGK
FLEKHLSFYLTQLSYEVKSGRLSALEMIHGIITGFPLTVLSQHSGLFFLMIGARLANDED
PDCRKLCAKCIKEMITRLPHNDKNKLFDIILLWLKEVKVSHRRLAAQLCGIFITVEKQEF
ESRLAKLLPLVLKQFNDTDSDDSEPGRFVRIKKQDISNSDDFRKDKKKLGDSERMRDHHL
FQVLQMFLKLSSNCPSFLKDEKYEDAVCILAAHSQSLLAHPHLWVRLAAAQLIGFILAAI
DVEKVADALENPESYADQKGYIYSDPVATMKSLALDLAAQLQPELVFEDLADQVVKNLIF
VARALKSFHIKGGKKPDNHSSTSESDGDRISLFWLVKRMRKIVNVEVTQSPKSTAMRTAV
FKWTAGVVATISVENLNPVLFHLMSPLVREMTTTEESNAPLRHLAKDVATMIKKSLGSEE
YMKLLSKVQQKLDTKRAEQKKSRTQEFITDPELAAKRKIARQQKKKEAKKRKMETMKGRK
SFGKKPRREVNFDAS
NT seq
8328 nt
NT seq
+upstream
nt +downstream
nt
atgaagaataaaccgacccgtcataaggaatcaaacacctttaagtttaagcccttctcg
gagcgcatagctgacatagatgttgatgtatttcatcgggtatcccatcgcaatgaggcg
gaaagtgatgaggtggaaacacatttttaccaatgtctccacaaatggagcgttcttaac
ctcacagagaattatacaaatttgaaaaaagaacttcgcggcattgtcacgctgccacaa
ctgttgaacagcaaagaacacgttatcgatgctcttttgaaatatctcagattgaaggat
actctgtgtctacagccgatactcgaattagtaatcgctgctgcacgagatcttcagaaa
gaattctatgagtactttcctcaattcttgacagtgataatagatttgctacatacaaac
gatgctgagcagctggaatatactttcacaacattggcttacctatttaaattcttgtgg
cggtacttgatcaagaatgtcgatgctgtgtttgatttgttgttaccattacttgctgag
tcaaaaccaacttacatcaatgattttgctgccgaaagttttgcatttgtagtaaggaaa
gtcaaagataaggacgcatttttagaactgctaatcaatgctttggaaaaaagaccagat
ggagtatcagggtgcggaaaactattatttcaagtcatccaaggaacgactggtcagttt
cattcctgcgctgaacaaatgttgacgctttacattggcagcctaaaaaatgagtccata
gataagcaaatgttatacagcattcttcaacaagttgtacagtgcttagtcaactccatt
catccacaaaaaagtgagattttttggaatgtttctcttcgattggcagatctgttttta
gagaactatgaaaaatcaagtggagatacggatgaattaaaaacggaaaaagagaatgca
ctgttcctactccatagtttattgttagaagccgttaatcatagagatggacgaatgctt
gttcatcccaatcaattgataaatgagctggtcaaagcactcgatttctttgaaaataag
gaaacgactgtaggtggtgacaaagtaatcgtgaagggcttggctaaactttctggatca
gttcttttggctcaaaacgtaaaacttactcaggagtattcgaataaacttgtacgaaag
atattggccatacgagatattgagattttgctttcagtagtggaacaactaatttcttat
tcgtcattcgaaacattggtattaccacatttcatgacctacagttttcagactggcttc
aacagcaatattttgcgacttttttctaaaataatcactgtcaaatcacctctttgtctt
aatggtacaaaattgaaagaatggaccagatacaatttgaatatccgtaatattccaggt
gaaagtttaaatcatatgcaaaatattttaacagctctgaatgataatgcaccgacagaa
gattcactgcgattgttgataacgttacctcacttgagccctgtgccgaagatttgtgaa
gaaacattgttagaagctacaaaaaatatttatggaaagttgaaaacattcgtcgatatt
aattcagacctgaagcttgacttgttaagtttcattttcctcttggcgattgaatctgtt
gcacacattctacagccaaacgaattttatgagtatattactaaacatgacataaatttg
tctatactgatagataagtattcgacggtgagaagtatactttgtgctgttgatttgtgc
ttgtcgcacattgtcgattcagaaattggcaataatctgataaatatagatctgtttaat
tcactaaatgaaagtttggcaccattattaggatctccgtaccataaagacagacttgtg
atagcccacatttattctttattcagtaatgttaaagatattttggccacaaatgatcaa
agtgataaaaacttcttggcattaccatatttagctgaggctgagccgtcaacagtccat
tgttatagagataaattgctacctctacaaggtcttgcgtttgaaagaattctactaagt
aactttgattcaaagtatttgaaatttcctatatattgtctgtttggaaatttgtatgta
aatttttcattgctatgggatccaataatgaaattaattgcatcgtacgcgcacaagcaa
tgcgattcattttggccaatatttatatcaaaattggaaagtgccaagacacaaggcgaa
tcggaaaccaccagtttgctcacgtttgattgtgacgttacttccacgctcttgtttcaa
gtttttgataatgaggacaaacctgattacaataactacagtttacttctttggaagtgt
atgtcattattttctgacttttgtgaaatgaaaaatagggatttgactggaatattcatt
gatttcgttgagagtaactttttcaaatccaacagcgaagatgctaaatcttggagtatt
aagaaacatgaaggtgataatgaattggcaaatcaaattgtccaggaaactgaagatgat
gatgaaatagatcatgagaaagccaccaaaaatgatttagcaacgaataaaatatcgttt
gacggtaaacataaaatcaagcttctcttggcacagatggaaatattttcaaaggtaaaa
aatccaagaactttgtaccgagaagccgatatgtataaaatttatttagaattacttgcc
tccaaaaatagtgaagttcagaaatctgctctaaactgtctgttcacttacaaacacaag
tatctagtaccgtacaaggagcatctatataatctaatagatgaaaaaagtttgaagaat
gagttagctttgtttaaaatagataaagaaagtaacatgatacaagacgatcacagagaa
gcattgctgccgattcttatgaggataatatatgctaaaatggtgatgaggacaggaatg
agaaccggaggaaaggctggtggtcttgttagaagaactattgtactacgatttctggct
ggaactcaagaagacgagatgatgacattcattagcatggcctttaagctttttcataaa
tatgtaccgatagcttccgaagaagaactcaatttgaatgaaatggtgagagatgtggtt
aataatctagatctatccaacatcattccgccaaaacgactacaaagctccgtgaattta
ctggcaattgtaatcgaacaatttggtggcaaaatgtcgagtaaattgctacctcgtttg
ttggggatactaatttgtatactagcacaagtaactggaatatcacaccgttcgaacgac
gttcatcccggatacatgtcttcgataagaaatctgcgtaccagttgtatgaacatacta
tctaggttcttttctcattatgaaagctacgaatggactgaaagtgaaatagatgcgctg
tttgctgtagcagtgtttccatggctcgaaaagttaccaatcgaaggtatccacagtcca
acggcactcttgaaactcttcatagcttggagccagaatccaaggtactatcccttgttc
gcaaaacatttcgaaaataatttgacgctgacaccgctgccatatgttatacaattatta
ttggggcctaaaacgcacggttctgtgataaacgcgatattggaaatgattgagaaaatg
ctgacgctgcaggattacggtgcaattgataataatgtgaatcaaatggacgtcgacgca
aagtttttcccaataatattgatcaataatatgctggaagtcaagcaaaatagcacccgt
tgtcgcacagataatatcaattacggatcagctctgctactgcctcacgtaccaaatata
ttagaatatataaaaaagaagttaaacaagagtaacaagggagtgaacaaaatcgaactg
gttgtattatcgcgtatatccgaatttgttgaagactccgaaacatgcgatactctgttg
acattgcttctgccaattcttgttaaaaaagcgacaactggtgcaagtgaagagattgtc
gttcagctggtttccaccatctttaatcttatgaagatcgttgaacacccagagaagcac
ttacgacttattgttccgcttaccggtgcgattacagctgtatcagctagaaaatccttg
atgcgattgtacaatattatatcagaaggatcatcggaacaacaccgtgatcttatgata
cgcaactgtaaactgcttgtcgagttgaacgcctgggacagtaagtggatcgatcaacca
gattttgataaaaggctagaggcgttcaaggaagtaaacacgttactggaggaagatgct
ctcacacttgagtttggcgcggcaataatatacaattgctttttctttttgaaaactgag
aaagatctagcactgagagatttgtcagggcagtgtttaaaaacaattgctccgaagttg
gtcagaaagtacaaggacaggcacttagaaaagaattatctaatcgatgaaaccattttg
tcaattgtgcggatgggcattcgggataaaaatgaaattgtacgcaaccagtctattgct
cttctgggccaattagcaatggaatgttccgatgttcatccagtgctccgagatcttcat
ccgctgagtaataaggctgatccagaagtggacgtttttgaaaacttgcaacacttgcaa
ttacacagaaaagcacgagcactgctcaagttttgctccattgcaaaaacctggacgaga
tctccaaatccaaaaacattgacgcaatttatactacctcttgcgtcgtcctacttgtgc
tctgaatcttttgtaaataaaaatagtatcgttgacgctgcgatcgaaacagtcggcact
gtctgtagactgttaccctggcatcagtacgaagttgtcctcaaatactatctagataaa
ttgagatcttcagttgaatttcaaaaacaaacaataagaattgttgttgcaatactagat
gcgttccattacaatctttcaaagtacaaggaacccgcaagctctgtaatcgctatagtg
aatacagaggatgtgaaagagccggatccattacccagttacgacgagggtagtgtgctt
gatagcattccggatatggatgaaaagttggacgaatcattggcggatgatgcgaaaaat
cttgatgaatcggagccgaaaagtggcaataattcacagataaatataccagcaatgcaa
agagagctgtttctttcacaatttgctgccagaagactagtattcggcatatcgaaggtc
ttgttgcctcagttaaatcggtcaatcatggcacgcacgcaacacgagaacagccacaag
gtaaacaggaaaaagactggcttcgaaagggaggaagaagaaattatgcgagtgccaatt
gcgcttgctgttgttaagctacttcaaaagttaccgccaggtgtactggaggaaaattta
cctggcatcctgatgaagttgtgcacatttcttaagtctcggttggactctgtcagacgt
attacacgtgaaactatgcaaaaaataatgataactttggggcctgagtatctgcgtcat
ttactcaaagagatgaacaacatattgacaaagggttttcaagtacacgttcttgtgtat
accattcatgctgtacttgtttcgttgaaaccatactacaaacctcttcatattaacgag
aatttgcacagcattttatcggtatgcaaggttgatctgtttggcctaactggagaagaa
aaagagatcgctggtattgtaaagaatgtttccgaagcgaagtcaactaaaagttttgac
atctttcatatattagctcaatttataaccgaatcatgcttactcgatctggttatgcca
ttgaagaatgcattaatcaaaacacactcctacaaaattatccgtaaagtagtcgagtgc
ttgagacaggtagttttgggtctggctgataatactttcattgaaataaacaaaatgcta
acatttctctatggcgttatatctgaaagtatacctgatctcttgcttgcaactaaacct
aaacaagtaactgaaagagaagctgaaataaaggcacgccaaaagcctgactgcttgatc
atcgtacctgaaccaaagaatagaatgggtgtaaaagcccaggcgaaaacttctagcaat
accaatgctcacattatggtggagtttggcctacgactgtaccatattctgttgaaacga
gatcgcatatcagcgccggaactggaatcctacttggaccctgtcgtatccatattgagt
gattgtttaaagtctcagcacgtcaagctgactacgcttgcccttcaatgcctgaattgg
atcctaaaaacagatcttccatcggtaaagacttacgttacagaaatttgttcttcgatg
ttcaatatactgcacaaatatgctgctgctggattaagcaaaggagacaacttcgatctt
gtaacggcagcgtttaagtgcatgtctgtgcttgtacgagatgtgaaagactttacaata
aattcagaacagttgaaaatacttattctctacgctgaacaagatttacacgattacgat
aagcaaggaactgcgtttactttactcagggctatactaagtcgaaaattaattatccca
gagatgcacgatgtaatggagaaagttgccaagctgagtgtaacgtcagaattagaccat
gtccggcaacaagcacgttctatatttcatatattcctcatggaatatccactaggaaag
ttcctcgaaaaacatctttccttttacctaacgcagttgagttatgaagtaaagtcagga
agactaagcgcgttggaaatgatacatggcattatcacaggatttccactgacggttcta
tcgcaacactccggtttgttctttttgatgatcggtgcaaggctagcgaatgacgaagat
ccggattgcagaaaactctgtgccaaatgtatcaaggaaatgattactcgactaccgcat
aacgataagaacaaattatttgatatcatactcctgtggttaaaggaagttaaggtttcc
catagacgactagcagcacagctttgtggtattttcattaccgtggagaaacaggaattt
gaatcacgtcttgccaagctgcttccacttgtactgaaacagtttaatgatactgactct
gatgattcagaaccaggtcgatttgtgaggataaaaaaacaggacatttcaaattcagac
gattttcgaaaggataaaaagaaacttggcgattcagaacgaatgagagaccaccacttg
ttccaagttttacagatgttcttaaaattatcatccaattgtcctagttttttgaaagat
gaaaaatacgaagatgccgtgtgcatattagctgcacacagccaatcgttactggcacat
cctcatctgtgggttcgtttagcagcagctcagctaattggatttattttggctgctatt
gacgttgaaaaagtagctgatgctcttgaaaacccagagagttatgctgatcagaaaggc
tacatttattcggacccagttgctacaatgaaaagcttagctctggacttggctgcacag
ttgcaaccagaacttgtatttgaagatctagctgatcaggtggtgaaaaacctaatattt
gttgctcgagctttaaaatcttttcacattaaaggcgggaaaaaacctgacaatcattct
tccacctcagaaagtgatggcgacagaatatcacttttttggcttgtcaagagaatgcga
aaaattgtaaatgtggaagttactcagtcacccaaatctaccgccatgagaactgcagta
ttcaagtggaccgcaggggtagtagcaactatatctgtggaaaatttgaatccagtattg
tttcatttgatgtcaccgctggttagagaaatgaccacaactgaggaaagcaatgctcca
ttacgtcatttggctaaagacgttgcaacaatgataaagaaaagtttaggaagtgaagag
tatatgaaactattgagcaaagttcaacaaaaattggacaccaaaagagctgagcaaaag
aaatcgcgaacacaagaatttattacggacccggaattagccgccaagcgaaaaattgca
agacagcaaaagaaaaaggaggcaaaaaaacggaaaatggaaactatgaagggtcggaaa
tcgtttggaaaaaaaccacgaagggaagtcaattttgatgcttcgtag
DBGET
integrated database retrieval system
