Neodiprion lecontei (redheaded pine sawfly): 107226198
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Entry
107226198 CDS
T09006
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107226198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nlo03041
]
107226198
Enzymes [BR:
nlo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107226198
Spliceosome [BR:
nlo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107226198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
SLFN-g3_helicase
T2SSE
nSTAND_NTPase5
AAA_30
ResIII
Cas3-like_C_2
TsaE
Motif
Other DBs
NCBI-GeneID:
107226198
NCBI-ProteinID:
XP_015522415
UniProt:
A0A6J0C7A6
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Position
2:34126261..34131002
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AA seq
888 aa
AA seq
DB search
MSKYRRKQSSPEDSDSDSEEERRKRDIKERDEFAKRLKSKDDTKVRKVATPAGSGAAEAA
KRLKVMETQSRDKLIPKLRVESRRKYLEKRKEDKVAELEADILDDEYLFGDEILTEREKR
EREHKKQLLQLAKEHEKAREMERVQRYHMPHERGKDAVEPETVDPEPPQSEQSKWESDQM
SSAVFRFGAKDRKAKQDYDLLLEDEVEFVQALQIPGSSKHKKQAVSPPKEMKVLTTIEET
QKSLPIYPFKNDLIQAIRDHQVLIIEGETGSGKTTQIPQYLYQAGFADDSKVIGCTQPRR
VAAMSVAARVAHEMAVKLGNEVGYAIRFEDCTSQRTRIKYMTDGTLHREFLSEPDLATYS
VMIIDEAHERTLHTDILFGLVKDITRFRTDLKLLISSATLDATKFSEFFDEAPIFRIPGR
RFPVDIYYTKAPEADYIDACVVSILQIHATQPSGDVLVFLTGQDEIETCQEMLQERVRRL
GTKLAELLILPVYANLPSDMQAKIFQPTPPGARKVVLATNIAETSLTIDNIVYVIDPGFA
KQNNFNSRTGMESLMVVPISKASANQRAGRAGRVAPGKCFRLYTAWAYQHELEDNTVPEI
QRINLGNAVLTLKALGINDLVHFDFLDPPPHETLVLALEQLYALGALNHRGELTKLGRRM
AEFPLDPMMAKMLLASERYRCSEEIATIAAMLSVNGAIFYRPKDKIIHADTARKNFHVPG
GDHLTLLNVYNQWQQSDFSTHWCYENFIQHRSMKRARDVREQLVSLMQRVEMELISGIDE
TINIRKAITAGYFYHVSRLSKGGHYKTAKHNQTVSIHPNSSLFQELPRWLLYHELVFTTK
EFMRQVTEIESKWLLEVAPHYYKPKELEDSTNKKMPKITGRSGPDGTN
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagtataggaggaagcaatcgtcgccagaagacagtgacagtgacagcgaagag
gagaggcgcaaaagggatattaaggaaagggatgaatttgccaaacgtctcaagtccaaa
gatgatacgaaggtgcgcaaggttgctacaccagctggatccggggctgcggaagcagcc
aagagacttaaggttatggaaactcaatctcgtgataagcttattcctaaacttcgcgtc
gaatcgcggaggaagtatttagagaaacgaaaggaagataaggtagctgagctcgaggct
gacatattagacgatgaatatctctttggagatgagatcctgactgagcgcgaaaagagg
gaacgagaacataaaaagcagctacttcagcttgccaaagagcatgagaaggcgcgtgaa
atggaacgggtgcaaaggtatcacatgcctcatgaacgaggcaaagatgctgttgagcct
gaaactgttgacccagaaccaccgcaatctgagcaaagcaaatgggagtcggaccagatg
tcatcagcagtatttcgttttggggcaaaagatagaaaagctaaacaggattatgatctg
ttgctggaagatgaagtagagtttgtccaggcgctgcagataccaggaagctccaagcat
aagaaacaagctgtttctcctccgaaggaaatgaaagttttaactaccattgaagagaca
cagaaaagtcttcctatatatccttttaaaaatgacttgatacaggctatcagggatcat
caggtgttaattattgagggcgaaactggttctggcaaaacaactcagattccacagtat
ttatatcaggctggttttgctgatgacagtaaagtcataggctgcactcagcccagaaga
gttgctgcaatgtctgttgccgcaagagttgcacatgaaatggctgttaaattaggaaac
gaagttggatatgctattcgatttgaagactgtacttctcagcgtacccgtatcaaatac
atgactgacggaactttacatcgtgagttccttagtgaaccagatcttgctacttacagt
gtgatgatcatagatgaagctcacgaaagaacattgcatacagacattttgtttggtttg
gtcaaagacataacaagatttcgtacagacctcaagctgttgatatcttcggctacacta
gatgccacaaagttcagtgaattttttgacgaggcaccaatctttcgcatacctggccga
agatttcctgttgacatttactatacaaaggcaccagaggctgattacattgacgcttgc
gttgtatctattcttcaaatacacgctactcaaccatccggagatgtacttgtctttctt
actggtcaggatgaaatagagacatgccaggagatgttgcaggaacgtgtcagaagattg
gggactaaattggctgagcttcttatcttaccagtttatgccaacttacccagtgatatg
caagcaaagatatttcaacctacacctcctggagctcgtaaggtagtcctagcaacaaat
attgctgagacatcattgacaatagataatatcgtctatgtgattgatcctggctttgcc
aagcagaataatttcaattctcgaacaggaatggagagcttgatggttgttccaattagt
aaagcttcagccaatcaaagagcaggcagagctggcagagtcgccccgggaaaatgcttc
cgcttgtatactgcttgggcatatcagcacgaacttgaagataacaccgttcccgaaata
cagaggattaatcttggtaatgcagtgttgacattgaaggcactaggcataaacgatttg
gtacatttcgattttttggatcctccaccgcatgaaaccttggtcttggcattagaacag
ctatacgcactaggggctttaaatcatcgtggagaactgacaaaacttggtcgtaggatg
gcggagttccctctagacccaatgatggccaaaatgctcttagctagtgaacgctatcgt
tgctcagaggagatagcgactattgctgcgatgctatctgttaatggagctattttttac
cgtccgaaagacaagatcatccatgcagatactgcaagaaaaaattttcacgttcctgga
ggggatcatctcactttactgaacgtttacaatcagtggcagcagagcgactttagcacc
cattggtgttatgaaaacttcattcagcataggtccatgaagagagctagggacgtcaga
gaacaacttgtaagcttaatgcaaagagttgaaatggagttgatatctggtattgatgaa
acaattaacatacgaaaggcaataacggctggttacttttatcatgtttcacgcctttcg
aaaggtggtcactacaaaacagccaaacacaatcagactgtttccatccatccaaatagc
tctctgttccaagaactacctcgatggctgctttatcacgagctcgtatttactaccaaa
gaattcatgcgacaggtaacagagatcgaaagtaaatggcttctcgaagtagcaccccat
tattataaaccgaaagaactcgaagattcgacaaataagaagatgccaaaaattacgggt
agatcaggtcctgatggaacaaattga
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