Neodiprion lecontei (redheaded pine sawfly): 107226642
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Entry
107226642 CDS
T09006
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5 isoform X1
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03018
RNA degradation
nlo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107226642
09123 Folding, sorting and degradation
03018 RNA degradation
107226642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nlo03019
]
107226642
03041 Spliceosome [BR:
nlo03041
]
107226642
Messenger RNA biogenesis [BR:
nlo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107226642
mRNA degradation factors
5'-3' decay
Lsm complex
107226642
Spliceosome [BR:
nlo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107226642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Hfq
BPL_C
Motif
Other DBs
NCBI-GeneID:
107226642
NCBI-ProteinID:
XP_015523011
UniProt:
A0A6J0C6P6
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Position
2:5614961..5616629
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AA seq
91 aa
AA seq
DB search
MTSSVTTNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLDDVTESEAT
PEGRRVTKLDQILLNGNNITMLVPGGDMPET
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgactagctctgtgactacgaatccatccacgcttttgccgctagaattggtggacaag
tgcatcggctcccgcattcacattatcatgaaaaatgataaagaaattgtgggtacatta
caaggatttgatgactttgtgaatatgttattggatgatgtgactgaaagcgaagcaaca
cccgagggacgcagagttacaaaattggatcagatcctcctcaatggaaataacattacg
atgttagtacctggaggtgatatgccagaaacataa
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