Neodiprion lecontei (redheaded pine sawfly): 107227211
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Entry
107227211 CDS
T09006
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X2
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107227211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nlo03021
]
107227211
03036 Chromosome and associated proteins [BR:
nlo03036
]
107227211
Transcription machinery [BR:
nlo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
107227211
Chromosome and associated proteins [BR:
nlo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
107227211
PBAF complex
107227211
GBAF(ncBAF) complex
107227211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM
SWIRM-assoc_1
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
BRCT_2
Motif
Other DBs
NCBI-GeneID:
107227211
NCBI-ProteinID:
XP_015523774
UniProt:
A0A6J0CC75
LinkDB
All DBs
Position
6:28056290..28061524
Genome browser
AA seq
1041 aa
AA seq
DB search
MLSLGPKKDGGPNAKFFESPDILGQLDGVKQWLLKNCKKYVQTDPPTNKSLASLVVQLLQ
FQEDNLGKNVSKPPMTRLPMKCFLDFKPGGGLCHILATAFRFKQEQGWRRFDFQVGKSGS
RMDRAIEMLVAAERALVQNRCMTVPCVYVRPDVDKNTASKVKEVVKRHQGTIAEAEADAT
HIVYPPADPLEEEYARPYLRRERSVLLHWYYFPDSYDSWTTLDLPWDFPEGPLGIGSTSG
RPQYRVSATWALDLDQYNEWMNEEDYDVDDNGQKRVHKYRLSVEDLMAQPSHPPPSSAKK
QKRKRSPSPPPKIGKRKSGRGPAGLQGSSTSLATPKKSRGGVDEEEDLTQGMEDPPAEPR
IIEVVASPANPPSIGPGGGSTAGSGSLSTTGNKKQDSELQPLKSGNMADLDEPIDGDKGS
TQAAQEREERGASKERGEGGKGDEPEDNVTEQTHHIVVPSYSAWFDYNSIHTIEKRALSE
FFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYITSTACRRNLAGDVCAIMRVHAFLEQWG
LINYQVDAESRPTPMGPPPTSHFHVLSDTPSGLAPVNPNPPKTPQPSSAAKSLLDLEKKP
AVVGMGPEEKSGLGVMTNFGLKVDQYSRKPAVLKSKQAAGATRDWTEQETLLLLEGLELH
KDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEEGGPEGLGPLAYQPVPFSKAGNPVMS
TVAFLASVVDPRVAASAAKAAMEEFAAIKDQVPAALLDQHLRNVQASANPDGKFDPSAGL
AQSGIAGTGPPEPPEDPAVSATSATSSSASVTSPQASTAESKKEELQDIKVKEGVDATQV
PPQSMKKEESVESERDQPEKIEVDPKENDDEAKSKGDPEETEAKEKRDKVVRDAQLQSAA
AAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEY
QRQQLITERQQFHLEQLKAAEFRARQQAHQRLAQEQQQQQQSQHPPWQASNTQQQQQQQQ
QPPSPQPQVAQPPPHTPPQQA
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgctctctttggggccaaagaaggacggcggtccaaatgcgaaattcttcgagtctcca
gatatactgggccaattggacggagtcaaacagtggcttctaaaaaattgtaaaaagtat
gttcaaaccgatccacccacgaataaaagtctcgcgtctttggtcgtccaattgttacaa
ttccaggaagataacctcggaaaaaatgtgtcaaaaccgccgatgacaagacttcctatg
aagtgtttcctagatttcaagcctggtggtggtctttgtcatatattagctaccgcgttc
agatttaaacaggaacaaggatggcgacgtttcgactttcaagtcggcaagtccggatct
cgcatggatcgtgcgatagagatgttagtggcagcggaacgggcactggtacaaaatcga
tgcatgacagtaccctgtgtgtacgttagaccagatgtagacaaaaatacagcgtccaaa
gtcaaggaagttgttaagcgtcatcagggaacaattgccgaagctgaggctgatgcaacg
cacattgtttatccaccagctgatccccttgaggaggaatacgctcgtccttacttgagg
cgtgaacgctctgttctattgcactggtactactttcccgacagttacgattcatggaca
acattagatctgccttgggatttccctgaaggtcctcttgggataggaagtacaagtgga
agacctcagtatcgtgtgtcggctacttgggctctagatcttgaccagtacaatgagtgg
atgaacgaagaagactacgatgtcgatgataatggacagaagagagttcacaagtaccgg
ctttctgtcgaagacttgatggctcaaccgtctcatccgccaccttcgtctgcaaaaaaa
cagaaacgaaaacgctcccccagtccacctccaaaaattggaaagcgtaaaagtggtcgc
ggaccggcaggactccaaggttcgtctacttctttggctactccaaaaaagtctcgaggt
ggcgtcgacgaagaagaagatctgacacaggggatggaagatcctccagctgaaccaagg
ataatagaagtggtagcaagcccagccaatccaccttctattgggcctggtggtggatct
acagctggtagtggaagtttgtcgacaactggaaacaaaaaacaagatagtgaactacaa
cctctaaaatctggcaacatggctgatttggatgagcctatagacggtgacaaaggaagt
acacaagcggctcaggaaagagaggaacgcggagctagcaaggaacgaggagagggtggg
aaaggagatgagccggaagataatgttactgagcaaacgcaccatattgttgtacccagc
tactcagcttggttcgattacaactcaatccataccattgagaagcgtgcgttgtccgaa
ttttttaatggtaaaaacaaatcgaaaacgcccgaaatctaccttgcttatcgcaacttt
atgatcgatacttaccgactaaatccaaccgaatatatcacctctactgcctgcagacgt
aatttagcaggagatgtgtgtgccattatgcgtgttcacgcgtttctagagcagtggggt
ctcattaattatcaagttgacgcagaatctagaccaactccaatgggtccgccacctaca
tctcacttccacgttctctcagacactccatctggactggcacctgttaatccgaatcct
cccaaaactccgcagccttccagtgctgcaaaatctctgttggatttggaaaagaagcct
gctgttgttggcatgggaccagaagaaaagagcggacttggagttatgactaactttggt
ctgaaggtggatcagtattccagaaaacctgcagttttaaaaagcaaacaagctgctggt
gccactcgcgattggaccgaacaagaaacgctattgttattagaagggttagagctccat
aaagatgattggaacaaagtttgcgaacatgttggatctcgtactcaagacgagtgcata
cttcatttcttacgtctacctatcgaagatccgtacctcgaagaaggaggccctgagggt
ctaggaccactcgcctatcagcctgttccattttccaaggctggtaacccggtcatgagc
acagtagctttcttagcttccgttgtggatccaagagtggctgctagtgctgctaaagcc
gctatggaagaatttgcagcaatcaaagatcaagtgcctgcagccctactggatcagcat
cttcgtaatgttcaagcaagtgctaatccagatggtaaatttgatccatcagcaggactt
gcacagtccggtattgcaggaactggacctccagaaccacccgaagatcctgctgtctca
gctactagtgcaacttcctcgtctgcaagtgttacttctcctcaagcttcgactgcggaa
agtaaaaaagaggagcttcaggatattaaagtcaaggagggggtggatgctacgcaggtg
ccaccacaatctatgaaaaaggaagagtcagtggagagtgaacgtgaccagccagaaaaa
atagaggtcgatccaaaggagaatgacgatgaagctaagtctaaaggagatcctgaagaa
actgaagctaaagaaaagagagataaggtggttagagatgcgcaactacaatctgctgcg
gcggccgcgttagcagctgcagctgtcaaagcaaaacacttagcagcggtagaggaaaga
aaaatcaagtctttagtggcactactggttgaaacgcagatgaaaaagcttgaaataaaa
ttgcggcatttcgaggagctggagacaacaatggaaagggaacgggagggcttggaatat
cagcgccagcaactaattacagaacggcagcaatttcacttggaacaattaaaagcagcg
gaatttcgtgctcgacagcaagcacaccaacggctagcccaggaacagcagcaacaacag
cagagtcagcatccaccgtggcaagcatccaatactcagcaacaacagcaacagcaacaa
cagccacctagtccgcagccacaggtggcgcaaccgcctccgcacactccacctcaacaa
gcgtaa
DBGET
integrated database retrieval system
