Neodiprion lecontei (redheaded pine sawfly): 107227411
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Entry
107227411 CDS
T09006
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107227411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nlo03021
]
107227411
03019 Messenger RNA biogenesis [BR:
nlo03019
]
107227411
Transcription machinery [BR:
nlo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107227411
Messenger RNA biogenesis [BR:
nlo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
107227411
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCHC
zf-CCCH_2
zf-CCCH_12
zf-CCCH_4
zf-CCCH_RBM22
zf-CCCH_DUS3L
Nab2-like_zf-CCCH_
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
107227411
NCBI-ProteinID:
XP_015524027
UniProt:
A0A6J0CBT4
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All DBs
Position
3:complement(20764122..20767999)
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AA seq
292 aa
AA seq
DB search
MECIVANVEHMKFDIEIALDEQYGALPLPFTGMDKSIAAVCQFYPRGTCVKGGSCPFRHV
RGDRTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACHNKECPFLHIDPETK
VRDCPWYDRGFCRHGPLCRHRHVRRVLCMAYLAGFCPEGPNCKFMHPRFELPAVQDMQPK
EGKKVMITCHFCGEGGHKAIYCNKMPPDIREAQARQEMEGGGQGAHPPHHHINSHSGPPP
RGPQKPLEEVTCYKCGTKGHYANKCPKGHLAFLSHTGGAAAAASGQNPSYRR
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggagtgcattgtagctaacgtggaacacatgaaatttgacatagaaatcgctctggac
gaacagtatggagccctgccgttacctttcacggggatggacaaatccatcgctgcagta
tgtcaattttatccacggggaacctgtgtcaaaggaggctcttgcccttttagacacgtc
agaggggacagaaccattgtatgtaaacactggttgcgaggtctctgcaaaaagggagac
cagtgcgaatttcttcatgaatatgacatgactaagatgcctgaatgctacttctactcc
cgattcaatgcgtgccacaacaaagaatgtccgtttcttcacattgatcctgagacaaaa
gttcgtgattgtccttggtacgatcgcggattctgcagacatggtcctctctgccggcat
aggcatgtacgaagggttctatgcatggcatatctagccgggttttgcccagaaggacca
aactgtaaattcatgcatcctcgttttgagctgcctgcagtccaagatatgcaaccaaag
gaaggaaagaaggtgatgataacatgccacttttgtggtgaaggtggtcacaaagcaatc
tactgcaacaagatgcctcctgatattagagaagctcaagcaaggcaagaaatggagggt
ggtggccagggagcacatcctccacatcaccacatcaattcacacagcggtccccctcca
cgaggacctcagaaacctttggaagaggtgacatgttacaagtgcggtacaaaaggacac
tacgcgaataagtgcccaaagggacatttagctttcctcagtcacactggaggagcagcg
gcagctgccagtggtcaaaatccaagttacagacgatga
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