Neodiprion lecontei (redheaded pine sawfly): 107228042
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Entry
107228042 CDS
T09006
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
nlo
Neodiprion lecontei (redheaded pine sawfly)
Pathway
nlo03030
DNA replication
nlo03420
Nucleotide excision repair
nlo03430
Mismatch repair
nlo03440
Homologous recombination
nlo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
nlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107228042
03420 Nucleotide excision repair
107228042
03430 Mismatch repair
107228042
03440 Homologous recombination
107228042
03460 Fanconi anemia pathway
107228042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nlo03000
]
107228042
03032 DNA replication proteins [BR:
nlo03032
]
107228042
03400 DNA repair and recombination proteins [BR:
nlo03400
]
107228042
Transcription factors [BR:
nlo03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
107228042
DNA replication proteins [BR:
nlo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
107228042
DNA repair and recombination proteins [BR:
nlo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
107228042
MMR (mismatch excision repair)
107228042
DSBR (double strand breaks repair)
HR (homologous recombination)
107228042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
zf-like
T2SSC
Motif
Other DBs
NCBI-GeneID:
107228042
NCBI-ProteinID:
XP_015524871
UniProt:
A0A6J0CBX3
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All DBs
Position
5:2100224..2104712
Genome browser
AA seq
607 aa
AA seq
DB search
MYELSEGALDQIMNGVEVEKPILQILGHKKLQSASTQERYRLLVSDGKRINSYAMLATQL
NSLITNDQLTEFSVCQVNRYAISMINNSGTQKRVMVILNIDVKIPGTEVGCKIGNPTQQD
GNVQNGDSTPAARSAAPVPKTNNSSNSVRPGRQQQSYLNDSVSSGAGISTTPIEALSPYQ
NRWVIRARVANKSAIKTWSNARGEGSLFSMDLVDETGEIRCTAFRDQCDKFYNMIEFGKI
YYISRCQLKPANKQFSNLKNEYEMTMTSETEVVPCHDDSDEIPTVKYDFAPISEIDGKEP
NAIIDVLGVCKSCSDITTVVARTTRKELKKRDVNLVDESNTMVTLTLWGTQADEFDGSSN
PVVAVKGARLAEFNGGKSLSTLNSSVLQIDPDIPEAHRLRGWYNTTGCTENVHTISKGLG
GGSGGMNGPWLTFKEAKDMQLGCRETPDYFIVKATINMIRTENSLYKACPTDDCKKKLID
QSNEMYRCEKCNRNYPNFKYRLLASINLADWTDNQWVTAFNEEAEKILGMTAQEIGELKD
NDDEAFLEKFGESAFKTFLLKLRVKMENYSDENRLKSTVVNVTPLDIKSYNNHLIAQIKE
LSNMGKA
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaacttagtgaaggagccttggaccaaatcatgaacggtgtcgaggtcgaaaag
ccgattttacagatattgggacacaaaaagctgcaatcggcgagcactcaggagcgctat
cgcctcctagtttcagatggtaaaagaattaactcatacgcgatgttggctacacagcta
aactcgctgattaccaacgaccaactgacagagttttccgtgtgccaagttaatcgatac
gcaattagtatgatcaacaattcaggaacacagaagagagtgatggtcatactcaacatt
gacgttaagattccgggcactgaagtgggctgcaaaataggaaatcctacccagcaagac
ggcaatgtacagaacggagattctactcctgctgcccgatcagcagcgcctgtaccaaaa
actaataattcctcaaattctgttcgtcctggaagacagcagcaatcttatcttaatgat
tcagtatcctctggtgctggtatctcaactacaccgatagaagccctgagtccttatcaa
aacaggtgggtaatcagagctagagtagccaataagtcagctataaaaacgtggagcaat
gcacgtggcgaaggttccctcttttctatggatttagtcgatgagactggcgagattcgc
tgcactgcattcagagatcaatgtgacaaattttacaacatgatcgagtttggaaaaatt
tactatatttcacgttgtcaactgaagccagcgaacaagcaattcagtaatttgaaaaat
gaatacgagatgacaatgacatccgaaacagaggttgttccttgtcacgacgattctgac
gagatcccaacagtgaagtacgattttgcaccaatcagtgaaattgatggaaaggagccg
aatgcaataattgatgtgcttggcgtttgcaaatcttgtagtgatatcacaactgtagtt
gcgaggactacaagaaaagagcttaagaagagggatgtcaatcttgttgacgaaagcaat
acaatggttactctcacattatggggaacccaggcggacgagtttgatggatcttctaat
cctgttgttgccgtgaaaggtgcacgtcttgccgaatttaatggtggaaaatctctgtct
acccttaattcgtcagtgctccagattgacccagacattcccgaagctcataggctccgt
ggttggtacaacacaactggatgcacagagaatgtgcataccatttctaaggggctgggc
ggtggcagtgggggaatgaatggtccgtggttgacgttcaaggaggctaaagacatgcag
ctgggctgcagagaaactcccgactacttcatcgtcaaggcaactatcaatatgataagg
actgaaaactctctttacaaagcgtgcccgaccgatgactgtaaaaaaaaacttatcgat
cagtccaatgaaatgtatcgttgtgaaaagtgtaacaggaactatccaaacttcaaatat
cgactgctggccagtatcaatctcgcagactggacagacaaccaatgggtaaccgcgttc
aatgaggaggctgaaaagattttgggaatgacggcacaagaaattggtgaattgaaggat
aatgatgatgaagcgtttcttgaaaagttcggtgaatctgctttcaaaactttccttctc
aaattgagagtaaaaatggaaaactatagcgatgagaacagattgaagtccaccgtagtg
aatgtgaccccgctggatattaaaagctacaacaatcatctgatcgcgcaaattaaagaa
ctttccaacatgggcaaggcataa
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