Neisseria lisongii: PJU73_05620
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Entry
PJU73_05620 CDS
T09339
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nls
Neisseria lisongii
Pathway
nls02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nls00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PJU73_05620 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nls03021
]
PJU73_05620 (rpoD)
Transcription machinery [BR:
nls03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PJU73_05620 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Catalase-rel
SPO22
DUF5660
GTP_EFTU
DUF2250
POX
TMPIT
Motif
Other DBs
NCBI-ProteinID:
WCL70853
LinkDB
All DBs
Position
1246856..1248805
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AA seq
649 aa
AA seq
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MSKNPLNPQDQDENRPLSTAEQRERLRQLIIMGKERGYITYSEINDALPDDMSDADQIDN
IVNMIAGLGIQVTEQAPDVEDILLSDNAASITDDDAVEEAEAALSNADSEFGRTTDPVRM
YMREMGQVDLLTREDEIIIAKKIEHALKNMVQAISACPGSIAEILALIEKIRNDEIRVDE
VVEAIIDPNEVLLNELGLSHLDSVDTDDVADSSDESDEDEEDAEDDDDTATDAESMSAAN
LEELKQKVLEHFQQIEADYAKMVAELNAHDSRHPDYLAHRDAIASKLLEVRFATRQIESL
SSNLRNRVDQIRKLEREIRDICQDRVHMDRDYFIANFLPNITNLAWVEEEVAKGGKWCDA
LDRFRHAIIEKQTALADMEKETRISIEELKEINKDMVKSEKETASAKQEMIQANLRLVIS
IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART
IRIPVHMIETINKMNRISRQYLQENGEEPDSAKLAELMQMPEDKIRKIMKIAKEPISMET
PIGDDDDSHLGDFIEDANNIAPADAAMYSSLHEVTKEVLESLTPREAKVLRMRFGIDMNT
DHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDRLKSFLDSEDHKL
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaaacccactcaatccacaagatcaggacgaaaaccgtccgttaagcacagcg
gaacagcgggaacgcctgcgccagctcatcatcatgggtaaagagcgaggctacatcacc
tattccgaaatcaacgatgccctacccgacgatatgtcggatgccgaccaaatcgacaac
atcgtcaatatgattgccggcttgggcattcaagtaaccgaacaggcacccgatgtcgaa
gacatcttattgagcgacaacgccgcctccatcaccgacgacgacgctgtcgaagaagcc
gaagccgccctttccaacgcagattccgagttcggccgcaccaccgaccctgtgcggatg
tatatgcgcgaaatgggacaggttgatctgctcacccgcgaagacgaaatcatcatcgcc
aaaaaaatcgaacatgccctgaaaaacatggttcaggccatttccgcctgtccgggttcg
attgccgaaattctggcgctgatcgaaaaaatccgcaacgacgaaatccgtgtcgatgaa
gtggtcgaagccattatcgaccccaacgaagttctgctcaacgaattgggcttaagccac
ctcgattcagtcgataccgacgacgttgccgacagcagcgatgagagcgatgaagacgaa
gaagatgccgaagatgacgacgacaccgccaccgacgccgaatccatgtccgccgccaat
ctggaagaattaaaacaaaaagtgttggaacacttccagcaaatcgaagccgactacgcc
aaaatggtcgccgaactcaacgcccacgacagccgccaccccgactatctggcgcaccgt
gatgctatcgcctccaaacttttggaagtacgcttcgccacccgccagattgaaagcctg
agcagcaacctgcgcaaccgtgtcgatcaaatccgcaaactcgaacgggaaatccgagac
atttgccaagaccgtgtccacatggatcgggactacttcatcgccaacttcctacccaac
atcaccaacctcgcatgggtagaagaagaagttgccaaaggcggcaaatggtgcgatgcc
ctcgaccgcttccgccacgccatcatcgaaaagcaaaccgcattggcggatatggaaaaa
gaaacccgcatttccatcgaagaattaaaagaaatcaacaaagacatggtcaaaagcgaa
aaagaaaccgcttcggccaaacaggaaatgattcaggccaacctgcgtctggtgatttcc
atcgccaaaaaatacaccaaccgaggtttacaattccttgacttgattcaagaaggcaac
atcggcctgatgaaagcagtcgataaattcgaataccgccgcggctacaaattctccacc
tacgccacatggtggatccgccaagccatcacccgctcgattgccgaccaagcccgtacc
attcggattccggttcacatgattgaaaccatcaacaaaatgaaccgcatttcccgccaa
tacctgcaggaaaacggcgaagaacccgattcggccaaactggcagaactcatgcagatg
ccggaagacaaaatccgcaaaatcatgaaaatcgccaaagaaccgatttccatggaaacc
ccgatcggcgacgacgacgattcacatttgggcgacttcatcgaagatgccaacaacatc
gcccccgccgatgccgccatgtattccagcctgcacgaagtaaccaaagaagtgttggaa
agccttaccccgagagaagccaaagtcctgcgtatgcgcttcggtatcgacatgaacacc
gaccataccttggaagaagtcggcaaacagtttgacgtaacccgggaacgcatccgccaa
atcgaagccaaagccctgcgcaaactgcgccacccaacccgcagcgaccgcctcaaaagc
ttcttggacagcgaagaccacaaactgtaa
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