Neisseria lisongii: PJU73_05620
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Entry
PJU73_05620 CDS
T09339
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nls
Neisseria lisongii
Brite
KEGG Orthology (KO) [BR:
nls00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PJU73_05620 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nls03021
]
PJU73_05620 (rpoD)
Transcription machinery [BR:
nls03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PJU73_05620 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Catalase-rel
SPO22
DUF5660
DUF2250
GTP_EFTU
POX
TMPIT
Motif
Other DBs
NCBI-ProteinID:
WCL70853
UniProt:
A0AAW5AQ91
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All DBs
Position
1246856..1248805
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AA seq
649 aa
AA seq
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MSKNPLNPQDQDENRPLSTAEQRERLRQLIIMGKERGYITYSEINDALPDDMSDADQIDN
IVNMIAGLGIQVTEQAPDVEDILLSDNAASITDDDAVEEAEAALSNADSEFGRTTDPVRM
YMREMGQVDLLTREDEIIIAKKIEHALKNMVQAISACPGSIAEILALIEKIRNDEIRVDE
VVEAIIDPNEVLLNELGLSHLDSVDTDDVADSSDESDEDEEDAEDDDDTATDAESMSAAN
LEELKQKVLEHFQQIEADYAKMVAELNAHDSRHPDYLAHRDAIASKLLEVRFATRQIESL
SSNLRNRVDQIRKLEREIRDICQDRVHMDRDYFIANFLPNITNLAWVEEEVAKGGKWCDA
LDRFRHAIIEKQTALADMEKETRISIEELKEINKDMVKSEKETASAKQEMIQANLRLVIS
IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART
IRIPVHMIETINKMNRISRQYLQENGEEPDSAKLAELMQMPEDKIRKIMKIAKEPISMET
PIGDDDDSHLGDFIEDANNIAPADAAMYSSLHEVTKEVLESLTPREAKVLRMRFGIDMNT
DHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSDRLKSFLDSEDHKL
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaaacccactcaatccacaagatcaggacgaaaaccgtccgttaagcacagcg
gaacagcgggaacgcctgcgccagctcatcatcatgggtaaagagcgaggctacatcacc
tattccgaaatcaacgatgccctacccgacgatatgtcggatgccgaccaaatcgacaac
atcgtcaatatgattgccggcttgggcattcaagtaaccgaacaggcacccgatgtcgaa
gacatcttattgagcgacaacgccgcctccatcaccgacgacgacgctgtcgaagaagcc
gaagccgccctttccaacgcagattccgagttcggccgcaccaccgaccctgtgcggatg
tatatgcgcgaaatgggacaggttgatctgctcacccgcgaagacgaaatcatcatcgcc
aaaaaaatcgaacatgccctgaaaaacatggttcaggccatttccgcctgtccgggttcg
attgccgaaattctggcgctgatcgaaaaaatccgcaacgacgaaatccgtgtcgatgaa
gtggtcgaagccattatcgaccccaacgaagttctgctcaacgaattgggcttaagccac
ctcgattcagtcgataccgacgacgttgccgacagcagcgatgagagcgatgaagacgaa
gaagatgccgaagatgacgacgacaccgccaccgacgccgaatccatgtccgccgccaat
ctggaagaattaaaacaaaaagtgttggaacacttccagcaaatcgaagccgactacgcc
aaaatggtcgccgaactcaacgcccacgacagccgccaccccgactatctggcgcaccgt
gatgctatcgcctccaaacttttggaagtacgcttcgccacccgccagattgaaagcctg
agcagcaacctgcgcaaccgtgtcgatcaaatccgcaaactcgaacgggaaatccgagac
atttgccaagaccgtgtccacatggatcgggactacttcatcgccaacttcctacccaac
atcaccaacctcgcatgggtagaagaagaagttgccaaaggcggcaaatggtgcgatgcc
ctcgaccgcttccgccacgccatcatcgaaaagcaaaccgcattggcggatatggaaaaa
gaaacccgcatttccatcgaagaattaaaagaaatcaacaaagacatggtcaaaagcgaa
aaagaaaccgcttcggccaaacaggaaatgattcaggccaacctgcgtctggtgatttcc
atcgccaaaaaatacaccaaccgaggtttacaattccttgacttgattcaagaaggcaac
atcggcctgatgaaagcagtcgataaattcgaataccgccgcggctacaaattctccacc
tacgccacatggtggatccgccaagccatcacccgctcgattgccgaccaagcccgtacc
attcggattccggttcacatgattgaaaccatcaacaaaatgaaccgcatttcccgccaa
tacctgcaggaaaacggcgaagaacccgattcggccaaactggcagaactcatgcagatg
ccggaagacaaaatccgcaaaatcatgaaaatcgccaaagaaccgatttccatggaaacc
ccgatcggcgacgacgacgattcacatttgggcgacttcatcgaagatgccaacaacatc
gcccccgccgatgccgccatgtattccagcctgcacgaagtaaccaaagaagtgttggaa
agccttaccccgagagaagccaaagtcctgcgtatgcgcttcggtatcgacatgaacacc
gaccataccttggaagaagtcggcaaacagtttgacgtaacccgggaacgcatccgccaa
atcgaagccaaagccctgcgcaaactgcgccacccaacccgcagcgaccgcctcaaaagc
ttcttggacagcgaagaccacaaactgtaa
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