Nilaparvata lugens (brown planthopper): 111045127
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Entry
111045127 CDS
T07276
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
nlu
Nilaparvata lugens (brown planthopper)
Pathway
nlu03020
RNA polymerase
nlu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nlu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111045127
09124 Replication and repair
03420 Nucleotide excision repair
111045127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nlu03021
]
111045127
03400 DNA repair and recombination proteins [BR:
nlu03400
]
111045127
Enzymes [BR:
nlu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111045127
Transcription machinery [BR:
nlu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111045127
DNA repair and recombination proteins [BR:
nlu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111045127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
111045127
NCBI-ProteinID:
XP_039291689
LinkDB
All DBs
Position
1:complement(49760453..49799684)
Genome browser
AA seq
1176 aa
AA seq
DB search
MYELDEEQYEEEDNEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DSPQIELQAEAQHTHGEIETPPHFLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTY
SAPLYVDILKTHIKYGEEPVETQHQKSFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWVNMM
ARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGTRGAKPGVTKEKRIKYAREILQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQ
KFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSE
VSIIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKKHIENLKEKDYNNYGWQVLVSSG
VVEYIDTLEEETTMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLFYPHKPLVTTRSMEYLRFRELPAGINSV
VAIACYTGYNQEDSVILNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQG
MRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPDNDDELEGTTKRFTKRDASTFLRNS
ETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTSE
GIAPDIIINPHAIPSRMTIGHLIECLQGKVSSNKGEIGDATPFNDAVNVQKISTLLQEYG
YQLRGNEVMYNGHTGRKINAQIFIGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA
RDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFECKG
CKNKTQISQVRLPYAAKLLFQELMAMNIAPRMMTVV
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaactagatgaagagcaatatgaagaggaggacaatgaagagatttcaagtgaa
ctgtggcaggaagcctgctggattgttatcaacgcctacttcgacgagaaaggtctggtg
cgacagcagctggattctttcgatgaatttattcaaatgtcggtgcaaaggatagtcgag
gattcgcctcagatcgagctgcaagccgaggctcagcacacgcatggagagatcgaaact
ccgccgcattttctgctgaaattcgagcagatctatctgtcgaagccgacccactgggag
aaggacggttcgccatcgcctatgatgcccaacgaagcgcgcctgcgcaacctcacctac
tcggcacctctctacgtcgacattctcaaaacacacatcaaatacggagaggagccggtt
gagactcaacaccagaaatctttcataggcaaaattccgatcatgctgagatccacgtac
tgtttgctcagcggcctcacagatcgtgatcttactgagttgaatgagtgccctctagat
cccggcggctacttcattatcaacggatctgaaaaggttttgatcgctcaagaaaaaatg
gccaccaacacagtgtacgtgttcagcatgaaagatggcaaatatgcttacaaggctgaa
ataagatcttgcttggaacattcttctcggcctacgtcaactttgtgggtcaatatgatg
gcgaggggtggtcagagcatcaagaaatcggccattggtcaaagaatcattgccatcctg
ccgtacatcaaacaagaaattcccattatgattgtgttcagagctttgggttttgtggct
gacagagatattctggaacacatcatctatgacttcgacgatccagaaatgatggaaatg
gtgaagccatcgctggacgaggcgtttgtgattcaggagcagaatgttgcactgaacttc
atcggaactcgcggcgcgaagcccggtgtcaccaaagagaagcgaatcaagtacgcacgt
gaaatcctgcagaaggaaatgttgccacacgtcggtgtttccgacttttgtgaaactaag
aaggcttatttcttggggtacatggtacacagactgctgttggcagcactgggtcgtcgc
gagctggacgaccgcgatcactacggcaacaagcgactcgatctggccggaccactgctc
gctttccttttcaggggtttattcaagaacctgatgaaggaagtaagaatgtatgcacag
aagttcatcgacagaggaaaagacttcaacctggagcttgctataaagacgaagataatc
acggatgggctgaggtattcgttggccactggaaactggggcgaccagaagaaggctcat
caggctcgtgctggagtatctcaggtgttgaatagattgacgttcgcgtcaaccctgtcg
catttgagacgagtgaactcccccatcggaagagatggtaaactagcaaagcctcgtcaa
cttcacaatactctatggggtatgatatgccccgctgaaacccccgaaggagcggctgta
ggacttgtcaagaatctggcgctcatggcgtacatctctgttggatcgcaaccctccccc
atcctcgagttcttggaagagtggagcatggaaaatctggaagaaattgcaccgtcagcc
atagcagatgccactaaaatatttgtcaacggttgttgggttggtattcacagagatcct
gaacagttgatgggaacactgcgcaaactgagacgtcagatggacatcattgtgagtgag
gtgtcgatcatcagagacattcgcgacagagaaatcagaatctacaccgacgccggacga
atttgtcggccgctgctgatcgttgagaacggtcaactgcttctcaagaagaagcacatc
gaaaatctcaaagaaaaggactacaataattatggttggcaagtgcttgtgtcaagtggt
gtggtggagtacattgacaccctggaggaggagacgaccatgatagcgatgtcgccggat
gacctgcgtcaggacaaggagtatgcctactgtaccacctacacgcactgcgagatccac
ccggccatgatactcggtgtgtgcgcctctattattcccttccccgatcacaaccaaagt
cccaggaacacctatcagagcgctatggggaaacaggcgatgggcgtgtacatcaccaac
ttccacgtgcgaatggacacgctggctcacgtgctgttctacccgcacaagccactggtc
accactcgctccatggagtacctgcgcttcagggagcttcctgccggcatcaactctgtg
gtcgccatcgcctgctacaccggatacaaccaggaggacagtgtcattctcaacgcctcc
gctgtcgagcgcggattcttcagatcggttttcttccgatcttacaaagatgcagaatcg
aagcgtattggagaccaagaggagcaattcgagaagcccaccagacagacgtgtcaggga
atgaggaatgccatttatgacaaattggacgatgatggcatcattgctcccggtctgaga
gtgtctggtgacgatgtggttattggcaaaaccataacactgcccgataatgatgacgag
ctggaaggtacaacaaagaggttcacgaagagagatgccagtactttcctgcgtaacagt
gagacgggaatcgtcgaccaagtcatgttaaccttgaactctgagggttacaagttctgc
aaaattcgagtcaggtctgtgcgtatcccgcagattggcgataagttcgcttcccgacat
ggccaaaaaggaacgtgtggaatacagtatcgtcaagaggacatgccttttacaagcgag
ggaatcgcaccggatattattatcaatcctcacgctatcccatctcgtatgacaattggc
catttaattgaatgtctccaaggaaaggtgtcgtcgaacaagggcgagataggtgacgcg
acgccgttcaacgacgccgtcaacgtgcagaagatctcgacgctgctgcaggagtatggc
taccagctgcgaggcaacgaggtgatgtacaacggccacaccgggcgcaagatcaacgcg
cagatcttcatcggtcccacctactaccagcgcctcaagcacatggtcgacgacaagatt
cactcaagagcgcgcggccctgtacagatactcgtgcgacagcctatggagggcagagct
agggacggtggattacgttttggagagatggagcgagattgccagatagcccacggcgct
gcccagttcctcagagagagattgttcgaagtgtccgatccttaccgaattcatgtttgc
aatttttgtggtttgattgctattgccaacctgcgcaataatacctttgaatgcaagggc
tgcaagaataagactcagatatcgcaagtccgacttccttatgcagcgaagcttctattc
caagagctaatggcaatgaacatagcgccccgaatgatgactgtcgtttaa
DBGET
integrated database retrieval system
