Nilaparvata lugens (brown planthopper): 111045709
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Entry
111045709 CDS
T07276
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X2
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
nlu
Nilaparvata lugens (brown planthopper)
Pathway
nlu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nlu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111045709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nlu03000
]
111045709
03019 Messenger RNA biogenesis [BR:
nlu03019
]
111045709
04121 Ubiquitin system [BR:
nlu04121
]
111045709
Enzymes [BR:
nlu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111045709
Transcription factors [BR:
nlu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
111045709
Messenger RNA biogenesis [BR:
nlu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111045709
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111045709
Ubiquitin system [BR:
nlu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
111045709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Nup35_RRM_2
zf-UDP
Baculo_IE-1
C1_2
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
111045709
NCBI-ProteinID:
XP_022186850
LinkDB
All DBs
Position
6:21789609..21825745
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AA seq
634 aa
AA seq
DB search
MSVLNQSGEEQVECPLCMEPLEVDDLNFYPCTCGYQICRFCWHRIRTDENGLCPACRKAY
PEDPADFKPLSQEEVARLKAEKRLKDQQRKQKITENRKHLANVRVVQRNLVFVVGLPVRL
ADAETLKKHDYFGKYGKIHKVVINQSTSYAGSQGPSASAYVTYQKPDDALRAIQAVNSIV
VDGRTIKTSLGTTKYCSHFMKNQSCPKGDCMYLHDFGDPEASFTKEEMQQGKHQEYEKKL
HDQLINSTCTNTATTTTTLNRKPTPSPPAVAIPTSAPVNIPNSAQPHAQAQSVNKEAWPS
LQTGLTPPNSDSAPMSVPIQTTHPASQSYPSPPNIQHNTNNNKNETRKNNSNTSKSHKKR
PPASEDRKPKENHTTHCSDQSQPLWEQEIECKDSVLLQTSTVSHVPPAETLSGQRSRAAN
LFEQDNNSFFSSNTFSKINNCTSGTVTDWSVNGVTNNMPDVLPPVHSSEDWQAAFGFPAV
QQQSEEMCGRDDDLGFDPFHETQKALAEMIEKEEQTHHRMYQQKLLTTMQHNQRITNCSK
LLDGLRVAPRTRLPPPGFTSTPNHMNAFGLGIPRTGTKVLPFMQPTISFPQHSAPPAWDW
SALDPAIVSTGQHCEMYTSPPPPGFAIRQTLDNL
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgctgaatcaaagcggagaagagcaggttgagtgtcccctatgtatggaaccg
ttggaggtcgatgaccttaacttctacccatgcacttgcggataccagatctgtcgattc
tgctggcaccggatcaggacggacgagaacggcctgtgcccggcctgccgcaaggcctac
ccggaggatccggccgacttcaagccactctcacaggaggaggtggcgcgactaaaagca
gaaaaacggctcaaagatcaacaaaggaaacagaaaatcaccgaaaataggaaacattta
gccaatgttcgtgtcgtgcaacgaaatttggtctttgttgtcggtctacccgtcagactt
gctgatgcagagacattgaagaaacatgattattttggaaagtatgggaaaattcataaa
gttgtcatcaatcaaagcacatcctatgcaggttcacagggtccgagtgcaagcgcgtat
gtaacgtatcagaagccggacgacgcgttgagagccatacaagcagtaaacagcatagtg
gtggacggacgcaccatcaaaacatctttaggcaccacaaagtattgttcacatttcatg
aaaaatcagtcgtgtccgaaaggagattgcatgtatttacatgattttggtgatccggaa
gccagcttcacgaaagaagaaatgcagcaaggcaagcatcaggaatacgagaaaaaattg
cacgaccagttgatcaatagcacttgtacgaatacggccacaactacgaccaccctaaat
aggaaaccgacgccgtcgcccccagctgttgccattccgacgtctgcgcccgtcaacata
cccaactcggcacagccgcacgcgcaggcgcaatctgtcaacaaagaggcgtggccctct
ctccagactggcctcacgcctcccaacagtgattcggctccaatgtcagttccgattcaa
acgacgcatccagcatcgcaatcgtatccttcgcctccaaacattcaacataacactaac
aataataaaaacgaaacacgaaaaaataattccaacacatcaaaaagccacaaaaagagg
ccaccggcatcagaagacagaaaacctaaagaaaatcacacaacacattgtagtgatcaa
agtcagccgctatgggaacaagaaatagagtgtaaagacagcgtattattacaaactagc
acagtatcccatgtcccacctgcagaaacgttaagtggtcaaagaagccgagcagctaat
cttttcgaacaggataataattcatttttctcgtcaaatactttctcaaaaatcaacaat
tgcacatcaggaacagtgacagattggtcggtgaacggcgtgacaaataacatgccagat
gttctgccgccggtgcactctagcgaagactggcaagccgcgtttggatttccagctgta
caacagcaatctgaagaaatgtgtggacgcgacgacgaccttggcttcgatcctttccac
gaaacacagaaggcgttggctgaaatgattgaaaaagaagaacaaacccatcatcgcatg
tatcagcagaagctgcttacaacaatgcaacacaatcaaaggatcacaaactgttcgaag
ctgctggacggacttcgggtggcaccccgcactcgcctcccccctcccggcttcacatcc
actcccaatcacatgaatgccttcggtctgggcattccaagaacaggaactaaggtttta
cctttcatgcagcctactatttcatttccacaacattctgctccgccagcttgggattgg
tcagcgctggacccagctatagtatcgacaggtcaacactgcgaaatgtacaccagtcca
ccgccacccggtttcgctattcgacagactttagacaatttataa
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