Nilaparvata lugens (brown planthopper): 111052101
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Entry
111052101 CDS
T07276
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nlu
Nilaparvata lugens (brown planthopper)
Pathway
nlu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nlu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111052101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nlu03019
]
111052101
03041 Spliceosome [BR:
nlu03041
]
111052101
03009 Ribosome biogenesis [BR:
nlu03009
]
111052101
03016 Transfer RNA biogenesis [BR:
nlu03016
]
111052101
Enzymes [BR:
nlu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111052101
Messenger RNA biogenesis [BR:
nlu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111052101
Spliceosome [BR:
nlu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111052101
Complex C
U4/U6.U5 tri-SnRNP related factors
111052101
Ribosome biogenesis [BR:
nlu03009
]
Eukaryotic type
Pre-60S particles
Helicases
111052101
Transfer RNA biogenesis [BR:
nlu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111052101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
111052101
NCBI-ProteinID:
XP_022194420
LinkDB
All DBs
Position
2:16387801..16420552
Genome browser
AA seq
1045 aa
AA seq
DB search
MADFDPLDIFKAFNENDESDDASESDHDVDEAEKDVKEVQPDTSLVVGESSQPQDDDVVE
EKPVLGTKRVLDSECKEDELPSKLIKNESFMDGINLDNLSSRVKVITVETVEKCVHELAI
PPDMEYVPLRPLGTPAKEYPFILDPFQKEAILCIDNNQSVLVSAHTSAGKTVVAEYSIAM
SLREKQRVIYTTPIKALSNQKYREFHEEFRDVGLVTGDVTINPSASCLIMTTEILRNMLY
RGSEIMREVGWVVFDEIHYMRNKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVA
HLHHQPCHVVYTDYRPTPLQHYLFPAGGEGIHLIVDEHGQFREDNFTAAMTVLANAGDAA
KGDRDRGRRGGQKGGDSNCFKIVKLIMERNFAPVIVFSFSKKECEMYAMMMSQLNLNSNE
ERELVNEVFNNAMSVLSEEDRKLPQVELVLPLLWRGIGIHHGGLLPILKETIEILFSEGL
IKALFATETFAMGLNMPARTVLFTGARKFDGKENRSLTSGEYIQMSGRAGRRGLDDKGIV
ILMVDERLSEKSAKDILQGEADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNN
TSIPNLVNKIKELEEKESRIVVPKESQVSSYFSIRDHLKQLGARFQEFISKPEYLISFLQ
PGRMIKIKDETEEYDWGIVINFKKLNASKGGKNPATSKGTLEIEVLLNLAESQLKSPPKP
CPEGTVGEIEVVKLSNTVVNQISSIRLYYPTDLRPPDNRKFVLKLIQEVKKRFPDGVPLL
NPIDDMKITDPGFKEICDQIAQYEERLFKHPLHGSPDLQDLYSKYSEKIKVEKELKSAKL
DLKSSMSLLHMEDLKCRKRVLRRLGYCTASDVIEMKGRVACELSSGEELLLTEMIFNGVF
NDLTVPQTVALLSCFVCDEKTKETPKRTEELRGPLRKMQELARRVARVSIESKLEMDEDE
YVESLRPSLTDVCYAWCLGSSFLQICEMTDIFEGSIIRCMRRLEELLRQMVQASKNIGNT
DLENKFSEAIKVIKRDIVFAASLYL
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggctgattttgaccctctagatattttcaaagccttcaacgaaaatgatgaaagtgat
gatgcttcagaaagtgatcatgacgttgatgaggctgaaaaggatgtcaaagaagttcaa
cccgacacgtcgctggtggtaggagaaagtagtcaacctcaggacgatgacgttgttgaa
gaaaaacctgtgctgggcacaaaaagggtgttggacagtgaatgcaaagaggatgaacta
ccatcaaaactcatcaaaaatgaaagcttcatggatggaatcaacttggacaatctatcg
tctagagtgaaagtgattactgtcgaaacagtggagaaatgtgttcatgagcttgcaata
cctccagacatggagtatgtgccgctgaggccccttggcacacccgccaaagaatacccg
ttcattctggatcctttccaaaaggaagcgatcctctgtattgacaataatcaatccgtg
ctggtatcagctcacacatctgctggaaaaactgttgttgctgagtacagtatagcaatg
tcactgcgtgagaaacagcgagtcatttacacgacaccaatcaaggcgttgagcaatcag
aaatacagagaatttcatgaggaatttagagatgttggacttgtgactggagatgtaacc
atcaatccatcagccagttgtttgattatgacgactgagattctgcgtaacatgctgtac
cgaggctcggagataatgcgcgaggtgggctgggtggtgtttgacgagattcactacatg
cgcaacaaggagcgaggcgttgtctgggaggagacgctcatcctgctaccggacaacgtg
cactatgtgttcctgtcggccaccatccccaatgcgcgtcagttcgccgaatgggtcgcc
cacctccatcaccagccctgtcacgtggtctacactgactaccggcccacgcccctccag
cactacctcttccccgccggcggcgagggcattcatctcattgtcgacgaacatggtcaa
tttcgagaggacaacttcacggcggccatgacagtgctggcgaacgctggtgacgcggcc
aaaggcgaccgagaccgtggcaggcggggtggccagaagggcggcgactccaactgcttc
aaaatcgtcaaactcatcatggagagaaacttcgctccggttatagttttctcgttcagt
aaaaaggagtgtgaaatgtacgctatgatgatgtcgcagctcaacctaaactcgaacgaa
gaaagggaacttgtgaacgaagttttcaataatgccatgagcgtactttctgaagaggac
cgcaaattgcctcaagtggaattggtacttcccctcttgtggagaggcattggtattcat
catggaggtttgttgccgattttaaaggaaacaattgaaattctgttttctgaaggcttg
ataaaagcgttgttcgcaacagaaacatttgctatgggtttgaacatgcctgctcgtact
gttttgtttactggagccaggaaattcgatggaaaggaaaaccgatctttgacgtcggga
gagtacatccagatgtcagggcgagcgggcagaagaggtctggacgacaaaggcattgtc
atcctgatggtcgatgagcgactcagtgagaagtcggccaaggacatcctacagggagaa
gccgatcccataaattcggccttccatctcacctacaacatggtcttgaatctgcttcga
gttgaagagatcaatccagagtatatgctggagaggagtttcttccagttccagaataac
accagtattcccaatttagtgaacaaaataaaagaacttgaggagaaggagtcgaggatc
gtagtgccaaaggaatcacaagtttcctcttacttcagtatccgagatcatctgaaacag
ttgggtgcacggtttcaggaattcatctcaaaaccagaatacctcatatcattccttcaa
cctggacgtatgattaagatcaaagacgaaacagaggaatatgactggggaatagtgatc
aactttaaaaagttgaacgcttcgaaaggtggaaagaatccggcgacgtcgaaaggcact
ctggagatcgaagtgctgttgaacctggcggaaagtcagctgaagtcgccgccgaagcca
tgtcccgagggcacggtcggcgagatcgaggtcgtcaaactgtccaacacggttgtcaat
cagatcagctcgatacgactttactatccgacagatttgcggccgcccgacaatcggaag
ttcgttctcaagctcatccaagaagtgaaaaaacgattcccagacggtgttccattactc
aatcctatcgacgatatgaaaatcacagatcctggattcaaggaaatctgtgaccagata
gcacagtatgaagaaagattattcaaacatccgttgcatggaagccctgatcttcaagat
ttgtactctaaatattctgaaaagataaaggtggagaaagaattgaagagtgcaaagttg
gacctgaaatcgtccatgtctctgctgcatatggaggatctgaaatgccgcaaaagagtg
ctgagacgcctgggctactgtacagcgtctgacgtcatcgaaatgaaagggcgagttgct
tgtgaactgagcagtggcgaagaacttctgcttaccgaaatgatattcaatggtgtattc
aatgacttgacagttcctcaaacagtagctcttctcagttgctttgtgtgtgatgaaaaa
actaaagagacacccaaaaggactgaggagctgagaggtccactgaggaaaatgcaggag
ttggcgaggagagtggctcgggtgagcatagagtcgaaactggaaatggatgaagacgag
tatgtggagagtttgaggccttcgctgaccgacgtctgctacgcctggtgtctaggaagc
tcgtttctacaaatatgcgaaatgactgatatatttgaaggtagtataattcgatgtatg
aggaggctggaagagttactgcggcaaatggtgcaggcttcgaaaaatattggaaatact
gacttggaaaataaattcagcgaagccatcaaagttatcaagagagatattgtattcgct
gccagtttgtacctatga
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