Nilaparvata lugens (brown planthopper): 111054671
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Entry
111054671 CDS
T07276
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
nlu
Nilaparvata lugens (brown planthopper)
Pathway
nlu03013
Nucleocytoplasmic transport
nlu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nlu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111054671
03015 mRNA surveillance pathway
111054671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nlu03019
]
111054671
Enzymes [BR:
nlu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111054671
5.6.2.5 RNA 5'-3' helicase
111054671
Messenger RNA biogenesis [BR:
nlu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111054671
mRNA cycle factors
Common to processing body (P body) and stress granule
111054671
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
NPHP3_N
AAA_16
nSTAND3
ATPase
SRP54
AAA_22
Motif
Other DBs
NCBI-GeneID:
111054671
NCBI-ProteinID:
XP_039291767
LinkDB
All DBs
Position
9:38398356..38507476
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AA seq
1137 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEETDLIGADTQGSEFDFTDFTLPSQSQTQASQLDSVQGQNQV
NGKLNGDVADNNVVSTAQKLSELQFEEDEEEAFYNKELPAFACKYCAIHDPSCVVMCNIC
KKWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETVLECYSCGVRNVFVLGFIPAK
ADSVVVLLCRQPCAAQNSLKDMNWDQEQWKPLIADRCFLSWLVKIPSEQEQLRSRQVNAT
QIAKLEELWRDNAEATLSDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQENVDVRWDVGLNKMTIAYFNLAKTDGDMKLMHGDELRLRYLGEMHKPWSGVGHV
IKIPDNFGEEVGIELKSSSGAPTQCTSHFVVDFIWKSTSFDRMQLALRKFAVDDNSVSSY
IYHRLLGHDVDEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVKQNGGPVLVCAPSNIAVDQLTEKIHRTSLKVVRVCAKSREAIDSPVSFLA
LHNQIRNMDCNTELQKLQQLKDETGELSSVDEKRYRLLKKASERELLDSADVVCCTCVGA
GDPRLSRLKFHSILIDESMQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKASRAGL
SQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSNFFYEGSLQNGVCADERKLAKMDFPWP
VVDKPMLFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLRCGVKPDQIGVITPYEGQR
AYLVQYMQYQGTLPSKLYQQMEVASVDAFQGREKDLIIMSCVRSNEHQGIGFLNDPRRLN
VALTRAKYGIIIVGNPKVLSKQPLWNHLLNFYKEQKVLVEGPLTNLKESMIQLSKPKQLV
NAANPGTHFMSTTTYDAREAMIPGSIYDRSGNTSAPSAPHYMPRPGAGAGPGLDLFARTH
DPISYISPERAQASLGNLPVPVGMFMNMSHIPPRFYNQHQQALQARQSQQAVGGGMSGAG
GRQMRRNGRMGAAGGAAKGNKGATHNSQDVSTQPGFSQAGITQAMSQNMSQGGVGGGSLS
QGLAQGGLGGLGDLSQPDNFLVGEFHSQMDGLLSQDSTYQGDRYPTNVQPPHYSQPY
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgatgcctatgggccgagttcccagactttaacctttctagacaccgaagaa
actgacttaattggtgctgatactcaaggatcggaattcgattttactgatttcactctt
ccttctcagagccaaactcaagcatcgcaattggactcagtgcagggacaaaatcaggtg
aacggtaaattgaacggagatgtcgcagataacaatgtggtgtccacagctcagaagctg
tcagagctacagttcgaggaagatgaggaggaagccttctataacaaggaattgcctgca
tttgcgtgcaagtactgtgccatccatgatccatcatgtgttgtgatgtgcaacatttgc
aagaaatggttctgcaatggccggggaaacacttctggttcacacatcataaatcaccta
gtacgggccaaacacaaggaggtgaccctgcacaaggatggacccctgggagagacggtg
ctggagtgctactcgtgtggtgtgcgcaatgtcttcgttctgggattcattccagccaag
gccgactcggtggtggtgctgctctgccggcagccatgcgccgcccagaactcgctcaaa
gatatgaactgggaccaggaacagtggaaaccgctgatcgccgatcgctgctttttgtcg
tggctggtgaagatccccagcgagcaggagcagttgcggtcgcgacaggtgaatgcaact
cagatcgccaaactggaggaattgtggcgagacaacgccgaggccacgcttagtgatctg
gagaagcccggcgtcgatgaagagccgcagcaggttctgctcagatatgaagacgggtac
cagtaccaaaacatcttcggtccgctggtgaagctggaggcggactacgacaagcggctg
aaggagtcgcagacccaggagaatgtcgatgtgcgctgggatgtcggcctcaacaaaatg
actatcgcttacttcaacctcgccaagactgacggcgatatgaagctgatgcatggtgat
gaactgcgcttgcgttatctgggcgaaatgcacaagccttggtcgggagtgggccacgtc
atcaagatacccgacaactttggcgaagaggtcggcattgagctgaagagctccagcggt
gcacccacccagtgcacgtcccactttgtcgtcgactttatctggaagtcgacatctttc
gaccggatgcagctggcacttcgcaagttcgccgtggatgacaactctgtgtccagctac
atctaccaccgcctcctggggcacgatgtcgacgaggtgctgttccgctgccacctgccc
aagcacttctccgcacccaacctgcccgatctcaaccgctcacaggtgtacgcggtgaag
cacgcactgcaacggccgttgtcgctcatccagggtccaccgggcaccggcaaaacggtc
acctcggccaccattgtctatcagctggtcaaacaaaatggcggaccggtgctcgtctgc
gctccctccaacatagccgtggaccagctcaccgagaagatacatcgcacctcgctcaag
gttgtccgagtatgcgccaaatcgcgtgaagcaattgattctcccgtttcattcctggct
ctacacaatcagatcagaaacatggactgcaacacagagctgcagaagctgcagcagctg
aaagacgagacgggtgaactgtcgtcagtggacgagaagcggtatcggctgttgaagaag
gccagcgaacgggagctgctcgactcggccgacgtggtgtgttgcacgtgtgtgggggcc
ggcgacccgcggctgtctcggctcaagttccactcgattctaatcgacgagagcatgcag
gccactgagcccgagtgtatggttcccgtcatactcggcgccaaacagttgatacttgtg
ggcgaccactgccaactgggtcccgtggtgatgtgcaagaaggcgagtcgcgcaggtctg
tcgcagtctctgttcgagcgactggtcgtgctgggcatacgaccgttccgcctcgaggtc
cagtaccgtatgcaccccgagctcagtcgtttcccctccaacttcttctatgagggatcg
ctccagaacggggtctgtgctgatgagcgtaaactggcgaaaatggactttccgtggcca
gtggtggacaagccaatgctgttctacgtgacccaaggccaggaggagatagccggctcg
ggcacgtcctatctcaaccgcaccgaagcggccaacgtcgaaaagctgactacgcgtttt
ctacgctgcggcgtcaagcccgaccagatcggcgtcattacgccctatgagggccagcga
gcctacttggtgcaatacatgcagtaccagggtacactgccgtctaagctctaccagcag
atggaggtggcaagtgtggacgccttccagggccgcgagaaggacttgatcatcatgtcg
tgcgtgcgcagcaacgagcaccaaggcattggcttcctcaacgacccgcggcgtctcaac
gtggcactcacacgagccaagtacggcatcatcattgtcggcaatcccaaagtgctttcc
aagcaaccgttgtggaaccatctgctgaatttctacaaagagcagaaggtgctggtggag
ggacccctgaccaatctgaaggagtcgatgatccagctgtccaaaccgaagcagctggtg
aacgccgccaacccgggcacccacttcatgtcgacgaccacctacgacgcgcgcgaagcc
atgattcccggcagcatctacgaccgatcggggaatacgtctgcgccgtctgctccacac
tacatgccacggccaggtgctggggcggggccaggtttggacctgtttgcacgcacacat
gacccgatcagctacatttcgccagagcgcgcccaagccagtctgggcaacctgcctgtg
ccagttggcatgttcatgaacatgtctcacattccgccccgattctacaatcagcatcag
caggcattgcaagctcgtcaatctcagcaggcagttggcggcgggatgtcgggggcggga
ggccgccagatgagacgtaatggccggatgggtgctgccgggggggcagcgaagggcaac
aagggggcgacccacaacagtcaggatgtcagcacgcagcccggcttcagtcaggctgga
atcactcaggctatgtcacagaacatgtcgcagggcggcgtggggggcgggagcctgtcg
caaggattggcgcagggcgggctgggcggcctgggtgacctgtcgcagccggacaacttc
ctggtcggcgaattccactcgcagatggacggcctcctgtcgcaggactcgacctaccag
ggcgaccgctatcccaccaacgtccagccgccgcattattcacagccctactga
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