Nilaparvata lugens (brown planthopper): 111055647
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Entry
111055647 CDS
T07276
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
nlu
Nilaparvata lugens (brown planthopper)
Pathway
nlu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nlu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
111055647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nlu03400
]
111055647
DNA repair and recombination proteins [BR:
nlu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
111055647
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
XS
Motif
Other DBs
NCBI-GeneID:
111055647
NCBI-ProteinID:
XP_022198580
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Position
1:complement(60316438..60361553)
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AA seq
1164 aa
AA seq
DB search
MSNTLFNYFTKPSSSSPRVQSDDTSKTRTPNSAVKKHRSSDIKTPKAKKAKLELGPKKEK
QKENKTPNEPGDEDQDIDKDSSIDEVEALLENDGSEDEYKPSKSDNDESSGDESGEESDS
ISEKSESEEEVANKKSKKRKATDSKEKSTNSKVSKKLESSFNTPAKPKIASSTPVTPSFS
PYVNEGSSALGDKIDNYAHLKFEFLKPEKLRDAKKRKTTDPEYDPRTLYIPDEFKKTLTP
AHKQWWDMKATHFDCVLFFKVGKFYELFHMDAVIGVNELNLTYMKGDFAHSGFPEIAYGR
FATTLVEKGYKVARIEQTETPDMMEKRCKTMGKVTKYDKVVKREICQITTKGTRVFSVID
GETKEPESHFLLAVSEKKFDNGGSAFGVCFVDTSIGEFNLGQFSDDKQCSRLRTLVAHYP
PSQIIYERGRISKGTQHLLNVTLSSVLKDGLLPDSEFWSSGKTLVHLADNNYFDDNSMPE
SLKHFLADDDSLGLTASDEGELAVRSLGAVTWYLKRCQLDHQLLSMKKFSVYTPVDCQSD
ENITSNSQSSARHMVLDAVTLKNLHILENSIGGTEGTLLHKLDNCCTPFGKRLLYNWICS
PLNTIASVVGRQNAIQLLMDNSQLMQDVKPLMAKLPDLERLLSRIYAQSTFGLEASHPDN
RAIMFEEKTYSKKKIVEFTNVLNGFQNVMKIAEIFQDSEVGMNSQLLGQCCHHPSHSQPG
QFPDLKDHLNFFKNAFDIDEALKEGRIIPSAGVDAEYDSAVEELKIIEKELKQYLDKQSS
YFGCKVSYVGTDKKRFQLEVTEHASRKAGSEYELQGQRKGFKRYWTPKCKELLEKQIAAE
DMKTSALQDLRRRIFARFSDRMNDWRLAVECIAVLDVLLSLATYCSSQENEMCVPKFESV
SPNQQAVVKVVGGRYPCSSGEEVFVPNDTVIGDLGANLVLVTGPNMGGKSTLMRQLGLIV
IMAQMGCHVPAESVVLNPVDRIFTRLGANDDIMSGESTFFMELSETSAILQHATSNSLVL
IDELGRGTSTYDGTAIAAAVLKELSKMNCRTLFSTHYHSLVEDFKHCKTVKLGHMSCMAE
TEDEEMDTGAEETVTFLYKFAEGACPKSYGFNAARLAGIPTHIIKTGHQFAKQLELESNN
RKIFKDLFRFNDPSHLRQILSEVH
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacacactcttcaattattttacaaaaccgtcctcttcttcgcctagagtgcaa
tctgatgacacatcaaaaactagaacacccaactctgccgtaaaaaagcatcgttcttca
gatataaaaactccaaaagctaaaaaagcaaagttggaactgggtccgaaaaaagaaaaa
caaaaagaaaataaaactccgaacgagcccggtgacgaagaccaggatatcgataaagac
agttccattgatgaagttgaggctttgcttgaaaacgatggatcggaagatgaatataaa
ccatcaaaatctgataatgatgaaagttcaggcgatgaatctggtgaagaatcagacagc
atcagcgaaaaatctgaaagcgaagaagaagtcgccaataagaagtcgaagaaaagaaaa
gcaacggactcaaaggaaaaatccacaaactcaaaagtttccaaaaagttggagtcaagc
tttaatacaccagcaaaaccaaagatagcttcttctactcctgtaacaccgtctttcagc
ccgtatgtgaatgaggggtcttctgctttaggtgacaaaatagacaactatgcgcatttg
aaatttgaattcctgaaaccagaaaaactaagagatgcaaaaaagagaaaaactactgat
ccggaatatgatcccaggacgttgtacataccagatgaattcaagaaaaccctgacacct
gcccataagcagtggtgggatatgaaagctacacattttgattgtgtgctgtttttcaaa
gttggaaagttctatgaattattccacatggatgccgtaattggagtcaatgaattgaat
ctcacctacatgaagggtgattttgcacattccggattcccagaaatagcttacggaaga
ttcgctacaacgctggttgaaaaaggctacaaagttgctcgtattgaacagactgaaact
cctgatatgatggagaaaaggtgcaaaacaatgggaaaggttacgaaatatgacaaagtt
gtgaagagagaaatttgtcaaatcaccacaaaaggcaccagagtgttcagtgtcatcgat
ggtgaaaccaaagaacctgagagtcatttccttctcgctgtatctgaaaagaaatttgat
aatggaggaagtgcatttggagtgtgctttgtggatacatcgattggagagttcaaccta
ggtcagttcagtgatgataagcagtgctcacgtttgcgaaccctcgttgctcactatccg
ccatctcagataatatacgaacgaggtcgtatttcaaagggcactcagcatttattgaat
gtgacgctgtcatctgttctgaaggatggattattgccggactctgagttttggagctct
ggaaaaactttagttcatttggcagacaataactacttcgatgataatagtatgccagag
tcgctaaaacacttcctggccgatgatgacagtttaggcttgacggccagtgatgagggc
gaactagctgtgaggtcacttggtgcagtgacgtggtatctcaaacgatgtcagttggat
catcaacttctttccatgaagaaattctctgtctacacgcctgtcgactgtcaaagtgac
gagaacatcacttccaatagtcagagcagtgctcgacacatggttttggatgcagtaaca
ttgaaaaatctgcatatccttgagaactcaatcggaggtacagaaggaacgctgcttcat
aagcttgacaactgctgcacaccgtttggaaagagactcctgtacaattggatctgcagc
cctttgaacaccatagcgtcggtggtcggccgtcagaacgccattcagctactaatggac
aactcacaactcatgcaagatgtcaaaccactcatggcaaagctacctgatctagagagg
cttttatcaaggatctatgcacaaagcactttcggtttagaagcttctcatccggataac
agagcaatcatgtttgaagagaaaacctactctaagaagaagatagtggaatttactaat
gttttgaacgggtttcagaatgtgatgaagatagcagaaatatttcaagattctgaagtt
ggcatgaattctcagcttcttggccagtgttgccatcatcctagtcactcccagcctggt
caattccctgatttaaaagatcatttgaattttttcaagaacgcgtttgacatagacgaa
gcattgaaagaaggacgtatcattcccagtgcgggtgtggatgctgagtacgacagtgct
gttgaagaattaaaaataatagaaaaggaactgaaacaatatctcgataaacagagctcc
tacttcggttgcaaggtttcttatgttggcacggataaaaagcgatttcagctggaagta
actgagcacgcaagtagaaaagctggctcagagtatgaactgcaaggacaaagaaaagga
ttcaaaagatattggactccaaagtgtaaagaacttctagaaaaacagattgctgcagaa
gacatgaaaacatctgctctgcaagatttgcgtcgtaggattttcgcacgcttcagtgat
cgaatgaatgactggcgtctagcagttgagtgtatagcggtgctggatgttctgctcagt
ttggccacctactgcagctcacaggagaacgagatgtgtgttcccaagttcgaatccgtc
agtccaaatcaacaagcggttgtgaaggtggttggcggacggtatccgtgctcgtctggc
gaggaggtgtttgtgccgaacgacaccgtcataggtgacctcggagccaaccttgttctg
gtcacagggcccaacatgggaggaaagtccacgctcatgcgccaattgggactcattgtc
atcatggcacaaatgggatgccatgtaccagctgagagtgtggttttaaatccggttgac
cgaatattcactcgacttggagcaaacgatgacatcatgtctggtgaaagtacatttttc
atggaactgtcagaaacttcggctattctccaacacgccactagcaactcacttgttctg
atagacgaactaggtcgtggaacgtcaacgtatgatggcactgccattgctgcggccgtt
ctcaaggagctcagcaaaatgaactgtcgtactctcttctccactcactaccactctctc
gttgaggatttcaagcattgcaagactgtcaaacttggccatatgtcatgtatggctgaa
accgaagatgaggaaatggacactggcgctgaggagacagttacgtttttgtacaagttc
gcagaaggtgcttgtccgaagtcatacggattcaacgcggcgcgactcgctggcattccc
acgcatatcatcaagactggccatcagtttgccaagcagttggagcttgaatccaacaat
cgtaaaatattcaaggatctattccgatttaatgatcccagtcacttgcgacaaatattg
agtgaagttcattag
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