Nilaparvata lugens (brown planthopper): 111056137
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Entry
111056137 CDS
T07276
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
nlu
Nilaparvata lugens (brown planthopper)
Pathway
nlu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nlu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111056137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nlu03019
]
111056137
03041 Spliceosome [BR:
nlu03041
]
111056137
Messenger RNA biogenesis [BR:
nlu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111056137
Spliceosome [BR:
nlu03041
]
Complex B
Other components
Prp19-related factors
111056137
Complex C
111056137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_8
TPR_15
ARM_TT21_C
TPR_12
RPN7
NRDE-2
ARM_TT21
TPR_10
DHR-2_Lobe_A
TFIIA
PPR
Motif
Other DBs
NCBI-GeneID:
111056137
NCBI-ProteinID:
XP_039280015
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Position
3:complement(55382592..55428101)
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AA seq
862 aa
AA seq
DB search
MVMELVFNEEDLPYEEEILRNPFSVKHWLRYIDHKKDAPKNGVNIIYERALKELPGSYKL
WYNYLKLRRRQVKGRTILDPAYEDVNNAFERSLVFMHKMPRIWFDYCQFLSDQCRVTRTR
HLFDRALRALPITQHHRIWPLYLSFIRKHDIPETAVRVFRRYLKLCPEDTEDYIEYLTSV
DRLDEAAVKLAYIVNKEDFVSKHGKSNHQLWNELCELISKNPDKVRSLNVDAIIRGGLRR
YTDQLGHLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELSLSKR
MEEAAKASNSTEEDEVDLELRLARFENLIERRLLLLNSVLLRQNPHNVHEWLKRVKLYEG
KPHEIINTYVEAVQTVEPKLAVGKLHTLWIAFAKFYEDNGQIEDARVVMEKATQVPYTKV
DDLASVWCEWAEMEIRHENYDGSLKILQRASVMPSRKVAYHDETETVQMRVYKSLKLWSM
YADLEESFGTFKSCKSVYDRIIDLKIATPQIIINYGLFLEEHKYFEEAFRAYEKGIALFK
WPNVYDVWNTYLTKFLDRYGGTKLERSRDLFEQCLENCPPKFAKALYLLYAKLEEEHGLA
RHAMAVYERATSAVLPEEMFDLFNIYIKKAAEIYGVPKTRQIYEKAIEVLNEDNTREMCL
RFAEMETKLGEIDRARAIYGHCSQICDPRVTSEFWQTWKEFEVRHGNEDTMREMLRIKRS
VQATYNTQVNMMSAQMLSAASNVSGTVADLAPGAKDGMRMLEAKAAEMAFEERSATAPAA
AQVKGGNILFVRGETQGQDRDGTDTTRVVNPDEINIDDDDDVDDDDAASDDEQEEEEMPV
EKQSIPSEVFGSLKRKKDDDSD
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggtgatggaattagtttttaatgaagaagatcttccttatgaggaagagattctgcgt
aaccctttctcagtgaaacattggctcaggtacattgaccacaaaaaggatgctccaaaa
aatggagtaaatattatctatgagagagctctcaaggaactgcccggaagctacaaacta
tggtacaactatttgaagcttcgtagaagacaagtcaaaggccggaccattctcgatcct
gcttatgaagatgtgaacaatgcatttgaaagatcgttggtcttcatgcataagatgcct
aggatttggtttgattactgtcagtttctgagcgaccagtgccgagtgacgaggacacgc
cacctgttcgacagggcgctgagggctctgcccatcacccagcaccaccgcatatggccg
ctctacctctcattcatcaggaaacacgacatacctgagacagctgtcagggtgttccgc
cgatatctcaagttgtgtcctgaggatacagaagactacatcgagtatcttacatcagtt
gacagactggacgaagcagctgtcaagttggcctacattgttaacaaggaggactttgtc
tccaagcatggcaaatccaatcatcagttatggaatgaactgtgtgaactaatatcgaaa
aatccggacaaagtcaggtcattaaacgtggatgccatcatcagaggaggtctgcggagg
tacactgatcaactgggtcatctgtggaactcgctggccgactactacataaggagtgga
ctcttcgaaagagctcgtgacatctacgaggaagcaattcaaacggtgactactgtacga
gacttcacgcaggtctttgatgcgtacgcgcaattcgaagaactaagtttgagcaaaaga
atggaagaagcagccaaagcatcaaacagtactgaagaagacgaagtcgatttagaactg
cgactggctagatttgaaaatctaatagaaagaagactcctactattgaattcagtgctg
ttgaggcagaatcctcataacgtccacgaatggctcaaacgagtcaaattgtatgaggga
aaacctcatgagataatcaacacgtacgtggaggcggtgcagacggtggagccgaagctg
gctgtgggcaagctgcacacactgtggatcgcattcgccaagttctacgaggacaacggc
cagatcgaggatgcgcgagtcgtcatggagaaggccactcaagtgccctacaccaaggtc
gacgacctcgcctcggtctggtgcgagtgggccgagatggagatcagacacgagaactac
gatggctcgctgaaaatcctacagcgggcttcagtgatgccgtcgaggaaagtggcctat
catgacgaaaccgaaacagttcagatgagagtttacaagtcactcaaactgtggtccatg
tatgctgatctcgaagaaagctttggcaccttcaagtcctgcaaatccgtttatgacaga
ataatcgatttgaagatagcgacgcctcaaattataataaattatggactatttctagaa
gaacataaatactttgaagaagcattcagggcatatgaaaaaggaatcgctttgttcaag
tggccgaatgtctacgatgtttggaatacttacctaacaaagtttttagatcgatatgga
ggtaccaaactggagaggtccagagatttatttgaacagtgtcttgaaaattgtccaccg
aaattcgctaaagccctatacctgctgtatgcgaaactggaggaagagcacgggttggcg
cgtcacgcaatggccgtgtacgagcgagccacgtcggctgtgctgcccgaggagatgttc
gacctgttcaacatctacatcaagaaggcggccgagatctacggcgtgcccaagacgcgc
cagatctacgagaaggcgatcgaagtgctcaatgaggacaacacgcgcgagatgtgtttg
cgcttcgccgaaatggaaaccaagctcggcgaaatcgacagagcacgcgccatctatggc
cactgcagccagatttgcgatcctagagttacaagcgaattctggcaaacatggaaagag
tttgaagttcgtcatggaaatgaggatacaatgagagaaatgctgcgaataaaacgaagt
gtacaggccacttataatactcaggtgaacatgatgtcggcgcagatgctatcggcggcc
agcaatgtgtcgggcactgttgccgatttggcgcccggagccaaggacggaatgcgcatg
ctcgaggccaaggccgctgaaatggcattcgaggagagatccgctactgctcctgctgca
gctcaagtgaagggaggaaacattctgtttgtgaggggagaaacgcaaggacaagaccgc
gacggaacggacaccacccgagtcgtcaatcctgatgaaatcaacattgatgatgatgat
gacgttgatgatgatgacgctgcctctgatgacgaacaagaagaagaagagatgccagtt
gagaagcagtccattccctcagaagtttttggtagtttgaagagaaaaaaagatgatgat
tccgattga
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