Nilaparvata lugens (brown planthopper): 111059870
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Entry
111059870 CDS
T07276
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13191
RNA-binding protein 16
Organism
nlu
Nilaparvata lugens (brown planthopper)
Brite
KEGG Orthology (KO) [BR:
nlu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nlu03021
]
111059870
03041 Spliceosome [BR:
nlu03041
]
111059870
Transcription machinery [BR:
nlu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111059870
Spliceosome [BR:
nlu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
111059870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_5
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
111059870
NCBI-ProteinID:
XP_039289517
LinkDB
All DBs
Position
7:6880922..6947362
Genome browser
AA seq
1873 aa
AA seq
DB search
MEAVKAFNDELSALYETKPPISKAKMTSITRTAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGTEKDVFAPRFARNLTQTFSHLFSCPPEDKSKVIRVLNLWQKN
GVFDADTINPLFDLADPSHPIHSEQAQANAQANAQANAASNGLSAKKPPSSATNTPLTRT
TPNSTKTPSSTTKPDTTTPSWISGNDSTPAANNSMLNMVQPSIVDTSMLQQLQQLHNILV
NQTSQQSADSHQHSSTPVKRDRDSGDQVKFDKKLLDFDYGDDEDDDGKTSPQQPAAPQPF
QQNTQAAAALDSLGSILGNPEVLRQLHSLQQHLDQQGREEKLRKLQQMKQQEEEFDKHLA
QTLPSLPFANECDFKLNLTVAAESSSGAGGSHQALLMHASGAAGSGASAMPSLPNMSQPP
PGYPPHHLHSGTAHAPNKSPLEDGERPNSDVDERQHGIRNWVSDAMLRSQNLNRQSGGGG
EGGGDSGAAVVVIDSESPSDSPGGRKRQRSSRYSRSSSRSRSRRRSRSRSRRRRSRSFDR
EYDRDDKGRSKDSVRDRQRKRKGLPPLRKNHLSVCSTTLWVGHLSRLVQQDELSNTFGEY
GDIVSIDLIPPRGCAFICMNRRQDANRALQHLKHHKMQQKAITLAWAPGKGMKGKEWKDY
WEVEQGVSYIPWNKITPQTDFDLLEEGGMFDEESVPEWLKLKLETSKQQKQAEKKLEDPR
RAPSSIDTHSQDDTPMNEDDNSKDLPGELDQPLGAPPGFIPLPDGPQPPPDPTAPHLKGP
LPPPPPLGLPPVGIMPPFGLPNMPRLMGGPMGMPMGPGLMPNVPLGVPPPGLISSPLIHQ
QMMQRLPQPVNSPFNPPPGVASLMSGPPPPLSQIPLPGSGAAPDKGGPKGPTGPPDPLTA
AFTDPLLQMPFSLPPQLQLNTLAPNLHQPAPQQVKLPPKPADSSQADNDKKDDNQMPSFS
HPPPNFPNLGAMNIPPPTTTPASTSNKDGDNNMQIDDKEDRDSRDKSGKKDSRDRDRERE
RERDYRGGRGREREREYRDRDRDYRGRERDYRSRDRRDRDRRSRDKDDDDDKKEGGRKSE
DRGKDRDRERDRDRDRDRGDRDRDRDRDRDRERDRDRRSSRGGGRWSDRDSKRKDDRSLS
EEKNNWTSSQDNNQNQQDRNDGFNNNNNSMNNNNNNHDASRQNMMDMHQGPPHPDNGPPK
GGPHGPQSGPPHGPPSGPPHGPPPGPHGPQSGPHGPPPHGPPSGPHGPPSGPHGPPSGPH
GPPSGPHGPPSGPHGPQSGPHGLPPHGPPPGPHGPPPGPHGPPPGQHGPPPGQHGPPPGQ
HGPPRGMPPPGPPMGMMMGDGPRPPFGPGGPPPMMFGPRGPVGGPPPVIDPDAFDMAGPP
GGGGGFGGPPPPGVVDMFDNGPPPPGMDGGGFGGGPRGPPVFGGGPPGQDRIRIEFFPRG
RGMRPDFGPRMMGRGGPMGPMFSPRGPGPRSPMRGPRPGMWMENQGGPHPQGPPGGPGFP
PPPRGFMTPPPGPGPDGAPPADDFNNSPQRNMSAAVMRGPMRGGPRFLGGAASRGDRRGS
RWSGSMSPGVEPDPEQDRKPENIEKKSSPEDSLAMDVDQPVKIEEAQKPLDMDIDLPKTD
DIKPQVASFKEDVVVKPPEDVVCKNEDVDSEVRRGVRKEEETARSNYEEEVRREEDRSNF
SEDVRKIEENNLGNNYSNEDKGLVRNEVEDSGRSNFEDQSNICSTNETNNFNMRREESSF
EGGEEKVGVVPEQRQEEFVAVPERRMSLEKPQEEFVRVPERRMSVEHRQDEFVAVPERRM
SLEHHQEEFVVRDQSTEEVRKEVVNDTPNPRTDSEISRTNEHVESASLNSSSTVEPLECS
TGESAVIPEESSS
NT seq
5622 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtaaaggctttcaacgatgagctctcagctctctatgaaacaaagcctcct
atatcaaaggctaagatgacgtccattactagaacggccatcaaagcaatcaagttctac
aaacatgttgtacaaagtgttgaaaagtttatacaaaagtgcaaacccgaatacaaggtg
cctggattgtatgtgattgattctatagtgaggcaatcgcggcatcagtttggaactgag
aaggatgtttttgcgccgagattcgccagaaacctcacgcaaactttcagccatctcttc
agctgtccgcctgaagataagagcaaagtaatccgcgtgctgaacctatggcagaagaac
ggtgtttttgacgcggacacgatcaacccgctgttcgacctggccgacccgtcgcatccc
atccacagcgagcaggctcaggccaatgcgcaggccaacgcgcaggcgaatgcagcaagt
aatggactctctgccaagaaaccaccttcttccgccactaacacaccactaactcggact
acgcccaattcaacgaaaacgccgagctcaacgacaaaacctgacacgacaactccatct
tggatatccggaaatgactcgacaccagccgctaacaactccatgctaaatatggtacag
ccgtcaatagtagacacttcgatgcttcaacagctacaacagctgcacaacatcctggtg
aatcagacatcgcagcaatcagctgatagtcaccagcactcgtccaccccggtcaagaga
gatcgtgacagtggcgatcaggtaaaattcgacaagaaactgttggactttgattatggt
gatgacgaggatgacgacggcaagacctcgccgcagcagccggccgccccgcagccgttc
cagcagaatacacaggcggcggctgcacttgactctcttggcagcattcttggcaaccca
gaggtgctgaggcagctgcacagccttcagcagcacctggaccagcagggcagggaggag
aagctgaggaagttgcagcagatgaagcaacaggaagaggagttcgacaaacatctcgct
caaactttgcctagcttaccgtttgctaacgaatgtgatttcaagctgaacttgactgtg
gcggcggaaagctctagcggcgcaggcgggtcacaccaggcgctactgatgcacgcctcg
ggtgccgccggttcgggggcgtcggcgatgccaagtctgcccaacatgtcgcagccgcca
cccggctatccgcctcaccatctacattcgggcactgcgcatgcgccaaacaagagtccg
ctggaggacggagaaaggccgaattcggacgtcgatgagaggcaacatgggatacgtaac
tgggtttctgatgctatgttgcggagtcagaaccttaacaggcaatcaggaggaggagga
gaagggggaggcgacagtggcgctgcagtggtcgtgatagacagtgagtcgccgagcgac
tcgcccggaggtcgcaagcgacagcgctccagtcgctatagtcgctcatcgtcacggtca
aggtcgcgtcgtcgctcaaggtcgcgctcgcgtcgtcgaaggtctcgctcctttgacaga
gaatacgacagagatgacaaaggcagatccaaggactcagtgcgtgatagacagagaaag
agaaaaggtcttccgccgttgaggaaaaatcatttgtcagtgtgcagcacaacactgtgg
gtggggcatttgtcgcgactggtgcagcaggacgagctgtcgaacacattcggcgagtac
ggcgacatcgtgtccatcgacctcattccgccgcgcggctgtgccttcatctgcatgaac
cggcgtcaggacgccaaccgcgccctccagcatctcaagcatcacaagatgcagcagaag
gccatcacgctggcgtgggcccctggtaagggcatgaagggcaaggagtggaaggattac
tgggaggtggagcagggagtgtcctacattccctggaacaagattacgccccaaaccgac
tttgatctgctggaagagggaggcatgtttgatgaggagtcggtgcctgagtggcttaag
ttgaaattggagacttcgaaacagcagaaacaggcggagaagaaattggaggacccgcgc
cgagcacccagctccatagacacgcattcgcaggatgacacccccatgaacgaggatgat
aacagcaaggacctaccaggtgagctggaccagcctctaggtgcgcctcccgggttcatt
ccactgcccgatggaccacagccgccccccgaccctacggcgccccatctcaaggggccc
ctgccgcctccaccgcccctcggactgcctcctgtcggtatcatgccgcctttcgggctg
cctaacatgcctcgtctgatgggtgggccaatgggaatgccgatgggccccgggctaatg
ccgaatgtgcccctgggcgtgccccctcccggcctcatcagctcccccctgatccaccag
cagatgatgcaacgccttccgcaaccagtcaactcgcccttcaatcctccaccgggcgta
gcgagcctgatgagcggaccgccgccgccgctgtcgcagatcccgctgccgggaagcggt
gccgcccctgacaaggggggccccaaggggcccactggccctcccgaccccctcactgcc
gccttcaccgaccccctcctgcagatgcctttctcgctgccgccccagctacagctcaat
acattggctccaaacctgcaccaaccggctcctcagcaggtcaaattgccgccaaaacca
gctgactcatcgcaggctgataatgataaaaaagacgataatcagatgccttcgttcagt
catccccctccaaactttcccaatttgggtgcaatgaacatcccccctcccacaactaca
cccgcctccacctccaacaaagacggagataataacatgcagatagacgacaaggaagac
agagatagtcgcgacaaatcaggcaagaaagactcgagagacagggacagagaacgcgag
agggagcgagattacaggggtggccgagggagagagcgggagagagagtaccgcgacaga
gatagggattaccgtgggagggagagagattacaggagtagggataggagagacagagac
agacggtctcgagacaaggacgacgatgatgataagaaggagggaggtaggaagagtgag
gacagggggaaggatagggacagggagagagatagagatagggatagggatcgtggtgat
agggatagagacagagatagggatagggacagggagcgagatagagataggcgtagtagc
agaggtggagggagatggagtgatagggatagtaagagaaaggatgatcggtcgttgagt
gaggagaagaataactggacaagttcgcaggataataatcagaatcagcaggatcggaac
gacggcttcaacaacaacaataatagcatgaacaacaacaacaataaccatgacgcctca
agacagaacatgatggacatgcaccagggaccaccccatcccgacaatggtccacccaag
ggtggtccacatgggccacaatctggaccaccgcatggcccaccgtctggaccaccgcat
ggcccacctcctggaccgcatgggccacaatctggacctcatgggccaccaccgcatggg
ccaccttctggacctcatggtccaccttctggacctcatgggccaccgtctggaccacat
gggccaccgtctggacctcatggaccaccttctggaccgcatgggccacaatctggacct
catgggctaccaccgcatgggccaccgcctgggccacatggtccaccgcctggaccacat
gggccaccgcctggacaacatggaccaccacctggacagcatggtccaccgcctggacag
catggaccaccaaggggcatgcccccgccaggaccgcccatgggcatgatgatgggtgat
ggaccaaggccgcctttcgggccaggtggcccacctccaatgatgttcggtccaaggggt
ccggtgggtggtcccccgccggtcattgaccccgatgccttcgacatggcgggtcccccg
ggaggcggcggtggctttggaggtcccccgcccccaggggtggtcgacatgttcgacaat
ggcccaccgcccccgggcatggatggaggcggcttcggcggtggcccccgggggccccct
gtgtttgggggcgggcccccaggccaggatcgcatcagaattgagttcttcccgcgcggc
agaggaatgcgacccgactttggacccaggatgatgggcaggggtggtcccatgggtcca
atgttctctccaagaggtcccggtcccagaagtcccatgagaggaccaaggccaggaatg
tggatggagaaccaaggcggcccgcacccacaaggtcccccaggcggtcccggcttcccg
ccgccgccacgaggcttcatgacgccgcctcccggtccgggaccggacggagcgccgccg
gcagacgacttcaacaacagtccacagcgcaacatgtcggcggccgtgatgcgcggtcca
atgcgcggtggtccgcgcttcctgggtggggcagcgtcgcggggagaccgtcgtgggtct
cgctggagtggttcaatgtcgccgggagtcgaacccgacccggaacaagaccgcaaaccg
gagaacatagagaaaaagtctagtcccgaggatagtttagccatggacgtagaccaaccc
gtgaaaattgaggaggcgcagaagcctctagatatggatatagatcttcccaaaactgat
gatattaagccacaggttgcgtccttcaaggaagatgttgtagtgaagcctcctgaggac
gtcgtttgtaaaaatgaggatgttgatagtgaggttaggagaggtgtgaggaaagaggag
gagactgctaggagcaactatgaggaagaagtgagaagagaagaggataggagcaacttt
agtgaagatgttaggaaaatagaggagaataacctgggtaacaactatagtaatgaagat
aaaggattagttaggaatgaggtggaggatagtggtaggagtaactttgaagatcagtcg
aatatctgtagtacaaatgaaacaaataattttaacatgcgtagagaggagagtagtttt
gaaggaggtgaggagaaggtcggagttgtgccggaacaacgtcaagaggagtttgtagca
gtgccagaacgtagaatgtctttggagaaacctcaggaggagtttgtgagggtgccggaa
cgtagaatgtctgtggaacatcgtcaagatgagtttgtagcagttccggagcgtagaatg
tccttggaacatcatcaggaggagtttgtagtacgggatcaatctactgaagaggttagg
aaagaagtagttaatgacaccccaaaccctaggaccgattcagagattagcaggactaat
gaacatgttgaatcggcttcgttgaacagtagtagtacagtagagccactagagtgtagc
actggagaatcagcagtcattcctgaggaatcatcgtcgtag
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integrated database retrieval system
