Nilaparvata lugens (brown planthopper): 111063139
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Entry
111063139 CDS
T07276
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nlu
Nilaparvata lugens (brown planthopper)
Brite
KEGG Orthology (KO) [BR:
nlu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nlu03016
]
111063139
Enzymes [BR:
nlu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
111063139
Transfer RNA biogenesis [BR:
nlu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
111063139
Prokaryotic type
tRNA splicing ligases
111063139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
111063139
NCBI-ProteinID:
XP_022206519
LinkDB
All DBs
Position
10:complement(13298701..13310095)
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AA seq
506 aa
AA seq
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MVVRQYNEEMSYLEKTSPFSWKIKKGFQPNMNVEGVFYVNQHLEKLMLDELRNACRPGMI
GGFLPGVKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMSDPTSVVSPGGVGFD
INCGVRLLRTNLMEKDVLPVKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAASKMGIESKGQICVMIHSGSRGFGHQVATDALVEMEKAMKRDKIETNDRQLACARIN
SVEGQNYLKSMAAAANFAWVNRSSMTFLSRQAFAKQFNMTPDDLDMHVIYDVSHNIAKVE
EHMVDGKLKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTETGM
KETFGSTCHGAGRALSRAKSRRNLDYTQVLQKLESQGISIRVASPKLVMEEAPESYKNVT
DVVDTCDAVGISKKAIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtccgtcaatataatgaagaaatgtcctacttggaaaaaacatcgcctttttca
tggaaaataaaaaagggattccagccaaacatgaatgtggaaggagtgttctatgtgaat
caacatcttgagaagttaatgttggatgaacttcgtaatgcctgtcgtccaggtatgatt
ggtggctttcttcccggagtcaagcagattgcaaatgtcgctgccttacccggaattgtt
ggacgatctgttggtctacctgatgtacattctggatacggatttgcaattgggaatatg
gctgcatttgacatgagtgatcccacatcagtggtttcacctggaggagtcggttttgat
atcaattgtggagttcgacttctgagaaccaatcttatggagaaggatgtgcttcctgtc
aaggagcaactagctcagagcatgtttgaccatattccggtgggagttgggtcaaaggga
ataattccaatgaacgctagagatctggaagaagcacttgaaatgggaatggattggtca
cttagagaaggatatgtttgggctgaagacaaagagcattgtgaagaatatggtcgaatg
ttgaatgcggatccatctaaagtcagtatgcgagctaaaaagagaggtctaccacagctg
ggaacgttaggagctggaaatcattatgctgaaattcaagtagttgacgaaatctatgat
aaatgggcagcgagtaaaatgggaatcgaaagtaaaggacagatttgtgttatgatccat
tctggaagtagaggattcggtcatcaagttgctacagatgctctagtcgaaatggaaaaa
gcaatgaaaagagataaaattgaaactaacgatagacaactggcgtgtgctagaatcaat
tctgtggaaggacagaactatttgaagtcaatggcagcggctgctaattttgcttgggtt
aatcgcagctctatgacattcctgagtagacaggcatttgcaaagcagttcaacatgaca
ccagatgacttggatatgcatgtgatctacgatgtttctcacaacattgccaaagttgag
gagcatatggttgatggaaaactcaaaacactcctagtccatcggaagggttcaactaga
gcttttcctccccatcatccactaattcccgttgactaccagctgactggccaaccagta
ttgattggaggcacaatgggaacatgcagttatgttctgaccggtactgaaaccggaatg
aaggagacttttggatcgacttgtcacggagcgggtcgagctctctccagagcgaaatca
agacgcaatctggactacacccaggttctgcagaaactggaaagtcaaggtatttcaatc
agagtggcatctcccaagctagtcatggaagaagcgcctgagtcatacaaaaatgtcact
gatgttgttgatacatgtgacgctgtaggtattagcaagaaagccatcaaattgaggcct
attgctgtgataaaaggataa
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