Nocardioides marmotae: HPC71_00335
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Entry
HPC71_00335 CDS
T09088
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
nmar
Nocardioides marmotae
Pathway
nmar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPC71_00335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmar03019
]
HPC71_00335
03400 DNA repair and recombination proteins [BR:
nmar03400
]
HPC71_00335
Enzymes [BR:
nmar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPC71_00335
Messenger RNA biogenesis [BR:
nmar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPC71_00335
DNA repair and recombination proteins [BR:
nmar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HPC71_00335
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
Cas3-like_C_2
DUF8755
HEM4
PglZ_C
DUF8096
Motif
Other DBs
NCBI-ProteinID:
QKD99713
LinkDB
All DBs
Position
70732..72849
Genome browser
AA seq
705 aa
AA seq
DB search
MTSPAAAPSPSSATDVREQAEAHLRALVGRDDAVLREDQWSAIEALAVDRRRALVVQRTG
WGKSAVYFVATLLLRGQGAGPTVIVSPLLALMRNQIAAAERAGIRAVTINSTNIEDWEPT
HQAIRDGEVDVLLVSPERLNNPGFRDEVLPKLAATCGLLVVDEAHCISDWGHDFRPDYRR
IRTLLAELPDGIPVLATTATANERVTADVAEQLGPLGQQVLVLRGSLDRESLRLGVVRLR
TAEQRLAWLADHLAEQPGSGIVYCLTVAATQEIADYLRSRGHDVAAYSGQTDTTERQALE
QDLAAGRVKALVATSALGMGFDATLGFVVNMGAPASPVAYYQQVGRAGRGTDEAVVVLLP
ATEDRDIWNYFASLAFPREELVRQTLDALAAEGRPMSTAALETRVELTRTRLETMLKVLD
VDGAVRRVRGGWESTGQEWSYDAERYRRVSEAREREQQAMLDYIATDRCRMRFLRDQLDD
PEAADCGRCDNCGGLDLSTEVSAAALEEAGARLSRPGVVVEPRKMWPTALANLGIDLKGK
IKDGASEGRAVARLTDLGHGQALRELFAPGTPDGPVPVPLVRAVVEVLEEWRPQVDAIVV
VESATRPTLTSDLASGLSRYLKVPVVGTWAVVDPDVAPGQGAMNSAQRVAAVGRRSALHA
DVPEGARVLLVDDRSDTGWSLTLAARALRRAGAAEVLPLVLAVTG
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgaccagccccgccgccgccccgtccccgagcagcgcgaccgacgtccgcgagcaggcc
gaggcgcacctgcgcgccctggtcggcagggacgacgccgtcctgcgcgaggaccagtgg
tcggccatcgaggcgctcgcggtcgaccgccgccgcgcgctggtcgtgcagcgcaccggt
tggggcaagtcggcggtctacttcgtggccaccctgctgctgcgcggccagggcgccggg
ccgaccgtgatcgtctccccgctgctggcgctcatgcgcaaccagatcgccgccgccgag
cgcgccggcatccgcgcggtgacgatcaactccaccaacatcgaggactgggagccgacg
caccaggcgatccgcgacggcgaggtcgacgtcctgctggtcagccccgagcgcctgaac
aaccccggcttccgcgacgaggtgctgccgaagctggccgccacctgcgggctcctcgtg
gtcgacgaggcgcactgcatctccgactggggccacgacttccggcccgactaccgccgg
atccgcacgctgctggccgagctgcccgacgggatcccggtcctcgcgaccaccgcgacc
gccaacgagcgggtgaccgccgacgtcgccgagcagctcggcccgctgggccagcaggtg
ctggtgctgcgcgggtcgctggaccgcgagtcgctgcggctgggggtggtgcggctgcgg
acggccgagcagcggctggcctggctggccgaccacctcgccgagcagcctgggtcgggc
atcgtctactgcctcaccgtcgccgcgacccaggagatcgcggactacctgcgttcgcgg
ggccacgacgtggcggcgtactccgggcagaccgacaccaccgagcggcaggccctcgag
caggacctcgctgcgggccgggtcaaggccctggtggcgaccagcgcgctcgggatgggc
ttcgacgcgacgctcggcttcgtggtcaacatgggcgccccggcctcaccggtggcctac
taccaacaggtcggccgcgccggccgcggcaccgacgaggcggtcgtcgtgctgctgccg
gccaccgaggaccgcgacatctggaactacttcgcctcgctggccttcccgcgcgaggag
ctggtccgccagaccctcgacgcgctcgccgcggagggccggccgatgagcacggcggcg
ctggagacccgggtcgagctgacccggacccgcctggagacgatgctcaaggtgctcgac
gtcgacggcgccgtacgccgcgtgcgcggcgggtgggagtcgaccgggcaggagtggagc
tacgacgcggagcgctaccgccgggtgagcgaggcccgcgagcgcgagcagcaggcgatg
ctcgactacatcgccaccgaccggtgccggatgcggttcctgcgcgaccagctcgacgac
cccgaggccgccgactgcggccgctgcgacaactgcggcgggctggacctgtccaccgag
gtctccgcggccgcgctggaggaggccggcgcccgcctctcccgccccggcgtggtcgtc
gagccgcgcaagatgtggccgaccgcgctggccaacctcgggatcgacctcaagggcaag
atcaaggacggcgcctcggaggggcgcgcggtcgcccggctgaccgacctcgggcacggc
caggcgctgcgggagctcttcgcccccggcacgcccgacgggccggtgccggtgccgctc
gtccgcgcggtcgtcgaggtgctcgaggagtggcgcccgcaggtcgacgcgatcgtcgtc
gtcgagtccgccacccgccccacgctgaccagcgacctcgcctccggcctgtcgcgctac
ctgaaggtgccggtcgtcggcacctgggcggtcgtcgaccccgacgtcgcccccggccag
ggcgcgatgaactccgcgcagcgggtcgcggccgtcggtcgccgctcggccctgcacgcc
gacgtgcccgagggggcgcgggtgctgctcgtggacgaccgctccgacaccggttggagc
ctcaccctcgccgcccgtgcgctgcgccgggccggggccgccgaggtgctgccgctcgtc
ctggccgtcaccggctga
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