Nocardioides marmotae: HPC71_00650
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Entry
HPC71_00650 CDS
T09088
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
nmar
Nocardioides marmotae
Pathway
nmar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HPC71_00650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nmar03400
]
HPC71_00650
Enzymes [BR:
nmar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HPC71_00650
DNA repair and recombination proteins [BR:
nmar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HPC71_00650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PDDEXK_1
AAA_22
TetR_C_13
DUF6897
ResIII
Motif
Other DBs
NCBI-ProteinID:
QKD99766
LinkDB
All DBs
Position
133837..137229
Genome browser
AA seq
1130 aa
AA seq
DB search
MSAEAFDIRDPLPTGTTLLEASAGTGKTWTIAALVTRYVAEGACPLERMLVVTFGRAASQ
ELRERVRTQLVEAERALADDPTLAPAEPSALIDLLLACDEGERARRHRRVSEALAGFDGA
TIATTHQFCSMVLGSLGVAGDTDARARLVEDLDDLLTEVVDDLYLRAFAFAETDPAFSRA
EAMGIARTVVGDPQARLEPADQDRTTPAGRRVAFARAVRAEMERRKRRLGVLSYDDLLAQ
LADALEHPDAPARARMRQRWSIVLVDEFQDTDPVQWQVLDRAFTGHATMVLIGDPKQAIY
AFRGGDVTTYLQAAATATTTKTLPVNWRSDEALLDAFQTVLRGAELGDPRIVVHDVTHHH
AGSRLAGAPSTAPFRLRVLRRDQLGRRGTAPLYVSQTRPHIARDLALDVRRLLASGATFE
GRPLEPRDVAVISYRHADLAACRAALHEVGVPAVIAGGGSVFATPAATEWLELLEALEQP
HRSARVRTAALTCFFGHTAAELDAGGDRLTDDVADTLRSWVEVFTRRGVAAVLEAATVGG
LPARVLAEVGGERRLTDLRHLGEALHEAALTERLGLVAMVTWLRQQMADAQEGRGAERTR
RLDSDAAAVQLVTIHASKGLEYPVVYLPALADRNVPKPSTPLFHDAQGRRCLAVGGPGGD
GWDDHVRRWADEEAAEHLRLLYVALTRARSQVVAWWSPTRNTPSSPLHRMVLGRRPGMAE
VPAEFANRSDDEAAEFLTRWQAAGGPTVEPAVLADPGPDPERPALPALGLRRFGREVDVA
WRRTSYSALTRVEVVAAAAAPGGVGSEPESVAKEDEPALPVPAPATSATEEAAPAAGEAV
LSPMADLPVGATFGSLVHAVLEHADPDAPDLREELLGHVREQLVRWPVPLDPERLADALV
AVCDSPLGSVGGTVASTTLRRVPLRDRLREMEFELPLSGGDLPAAGGRGARLGDLAPLLR
RHLPEGDPVRAYADQLDQPALGAQSLRGYLTGSVDVVLRLRDEQGRPRYVVVDYKTNWLG
PIDEPLTAAAYRPDALAGAMGHSDYPLQALLYAAVLHRFLRWRQPGYDPEVHLGGVLYLY
LRGMCGPGTPLVDGEPCGIFTWRPPVALVEALSDLLDGRVDSRGSQEVSA
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgccgaggccttcgacatccgcgacccgctgccgaccggcaccaccctgctcgag
gcgagcgccggcaccggcaagacctggaccatcgccgcgctcgtgacccggtacgtcgcc
gagggggcctgcccgctcgagcggatgctcgtggtgaccttcggccgcgcggccagccag
gagctccgcgagcgggtccgcacccagctggtggaggccgagcgcgcgctcgccgacgac
ccgaccctggcgccggcggagccctccgccctcatcgacctgctgctcgcctgcgacgag
ggcgagcgggcgcgtcggcaccgccgggtcagcgaggcgctcgccgggttcgacggcgcg
acgatcgcgaccacccaccagttctgctcgatggtgctgggctcgctgggcgtggccggc
gacaccgacgcccgcgcgcggctggtcgaggacctcgacgacctgctgaccgaggtggtc
gacgacctctacctgcgcgccttcgccttcgccgagaccgacccggccttcagccgcgcg
gaggcgatgggcatcgcccggaccgtggtcggcgacccgcaggcccggctcgagcccgcc
gaccaggaccgcaccacgcccgccggccgccgggtcgccttcgcccgggcggtccgcgcc
gagatggagcgccgcaagcggcggctcggcgtgctgtcctacgacgacctgctcgcccag
ctcgccgacgccctcgagcaccccgacgcgccggcccgcgcgcggatgcggcagcggtgg
agcatcgtgctggtcgatgagttccaggacaccgacccggtgcagtggcaggtgctcgac
cgggccttcaccgggcacgcgacgatggtgctcatcggcgacccgaagcaggcgatctac
gccttccgcggcggcgacgtgacgacgtacctccaggccgcggcgaccgcgaccaccacc
aagacgctgccggtcaactggcgcagcgacgaggccctgctcgacgccttccagaccgtg
ctgcgcggcgccgagctcggcgacccgcggatcgtcgtgcacgacgtgacccaccaccac
gcgggctcgcggctcgcgggggcgccgagcaccgcgccgttccggctgcgggtgctgcgc
cgcgaccagctcggccggcgggggaccgccccgctctacgtcagccagacccggccccac
atcgcccgcgacctcgcgctcgacgtgcgccggctgctggcctccggggcgacgttcgag
ggccggccgctcgagccccgcgacgtggccgtgatcagctaccgccacgccgacctggcc
gcgtgccgggccgcgctgcacgaggtcggggtgccggccgtcatcgccggcggcggcagc
gtcttcgccacccccgcggcgaccgagtggctcgagctgctcgaggcgctcgagcagccg
caccgcagcgcgcgggtgcggaccgcggcgctgacctgcttcttcggccacaccgcggcc
gagctcgacgccggcggcgaccggctgaccgacgacgtcgccgacacgctgcgctcctgg
gtcgaggtcttcacccgccgcggcgtcgccgcggtcctcgaggccgccaccgtcggcggc
ctgcccgcccgggtcctcgccgaggtcggcggcgagcgccggctcaccgacctgcgccac
ctcggggaggcgctgcacgaggccgcgctcaccgagcggctcggcctggtcgcgatggtc
acctggttgcgccagcagatggccgacgcgcaggagggccgcggggccgagcggacccgc
cggctggactccgacgccgccgcggtccagctggtgacgatccacgccagcaagggcctg
gagtaccccgtcgtctacctgcccgccctcgccgaccgcaacgtccccaagccctcgacc
ccgctcttccacgacgcgcagggccgccgctgcctcgcggtcggcggtcccggcggggac
ggctgggacgaccacgtccgccgctgggccgacgaggaggccgccgagcacctccgcctg
ctgtacgtcgccctgacccgcgcccgctcccaggtcgtcgcctggtggtcgccgacccgc
aacacccccagctcgccgctgcaccggatggtcctgggccgccggcccgggatggccgag
gtgcccgccgagttcgccaaccgcagcgacgacgaggccgcggagttcctcacccggtgg
caggccgcgggcgggccgaccgtcgagccggccgtgctcgccgacccggggcccgacccc
gagcggcccgccctgccggcgctcggcctgcgccgcttcggccgcgaggtcgacgtggcg
tggcggcggacgtcgtactccgcgctgacccgcgtggaggtggtcgccgccgcggccgcg
cccggcggggtcggcagcgagccggagtcggtcgcgaaggaggacgaacccgccttgccc
gtgcccgcgccggccacctccgctaccgaggaggcggcgcccgccgccggggaggccgtg
ctctccccgatggccgacctgccggtcggggcgaccttcggctccctggtccacgccgtg
ctcgagcacgccgaccccgacgcgcccgacctgcgcgaggagctgctcggccacgtccgc
gagcagctggtccgctggccggtgccgctggaccccgagcgcctggccgacgccctcgtc
gcggtctgcgactccccgctcggctcggtcggcgggacggtcgcgtccaccacgctgcgc
cgggtgccgctgcgcgaccggctgcgcgagatggagttcgagctgccgctgtccgggggc
gacctgccggcggccggtggccgcggcgcccggctcggcgacctcgcgccgctgctgcgc
cgccacctgcccgagggcgacccggtgcgggcctacgccgaccagctcgaccagccggcg
ctcggcgcgcagagcctgcgcggctacctgaccggctcggtcgacgtggtgctgcggctg
cgcgacgagcagggccggccgcgctacgtggtggtcgactacaagaccaactggctcggc
ccgatcgacgagccgctgaccgcggcggcgtaccgccccgacgcgctcgccggcgcgatg
ggccactccgactacccgctccaggcgctgctgtacgccgcggtgctgcaccgcttcctg
cgctggcgccagcccgggtacgaccccgaggtgcacctcggcggggtgctctacctctac
ctgcgcggcatgtgcggccccggcaccccgctcgtggacggcgagccgtgcgggatcttc
acctggcgtccgccggtcgcgctggtcgaggcactctccgacctgctcgacggccgggtc
gacagccggggttcccaggaggtgtccgcatga
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