Nocardioides marmotae: HPC71_04375
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Entry
HPC71_04375 CDS
T09088
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nmar
Nocardioides marmotae
Pathway
nmar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPC71_04375 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nmar03400
]
HPC71_04375 (mfd)
Enzymes [BR:
nmar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPC71_04375 (mfd)
DNA repair and recombination proteins [BR:
nmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPC71_04375 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
AA_kinase
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QKE00400
LinkDB
All DBs
Position
924029..927586
Genome browser
AA seq
1185 aa
AA seq
DB search
MSLTGLADVVLADPTLAAAVEDARGGAVRALDLTGPEALRPFVVTGLVRAGRTVLAVTAT
AREAEDLVEALGCFLDPGTVAYYPSWETLPHERLSPRSDTVGRRLAVLRRLVHPGDDASN
GPLQVVVAPVRSVLQPQVKGLGELAPVELVPGDDAPLDDVVRRLADAAYSRVDLVERRGE
FAVRGGIVDVFPPTEEHPLRVEFWGDEVEEIRAFSVADQRTLDKVERLWAPPCRELLLTD
EVRERAAELGRRHPTLVELTDKIAAGIAVEGMESLAPVLTDEMELLVDLMPADTHVLVLD
PERARSRAHDLVATSEEFLGASWAAAASGGTAPIDLGAASYRSLSDVREHALDQHKPWWT
MSPFGIGDDASGPVTDVDAIAGAVPSRALPMHPVDAYRGDLERAVKDIGTWLAEGYRTVV
VHPGHGPANRMVEVLAEHDVPARLVEDLSGPPATDVVTVTCASAAHGFVDELGRTVLLTG
EDLTGQKSSTRDMRKMPARRKKQIDPLELKAGDYVVHEQHGVGRFVEMKQREVGGAVREY
LVLEYGASKRGGPPDRLYVPADALDQVTRYVGGEQPSLDRLGGADWAKRKGRARKAVREI
AAELIKLYAARQATQGYAFGPDTPWQRELEDAFPFQETPDQLSTVDEVKADMRRTMPMDR
LICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVTQHLSTFAERMAGFPVVLKALS
RFQSDKEAAEVMAGIAEGSIDIVVGTHRLLNPDIRFKDLGLIVVDEEQRFGVEHKEQMKR
LRTSVDVLSMSATPIPRTLEMAITGIREMSTITTPPEERHPVLTYVGAYEDRQVVAAVRR
ELLREGQVFYIHNRVNSIEKAAARIRELVPEARVATAHGQMNEKQLEQVMLDFWEKRFDV
LVCTTLVESGLDVSNANTMIIERADTLGLSQLHQLRGRVGRSRERAYAYFLYPGEKPLTE
TAHARLATLAQHSDLGGGMAIAMKDLEIRGAGNLLGGEQSGHIADVGFDLYVRLVGEAVT
EFKGETEPELNEVRIELPVDAHLPHDYIPSERLRLEVYKRLAEVRSDADVDQIREELVDR
YGEPPEVVTSLLLVARFRARARTAGIGEVTAAGKNIRFAPVSLPESRVVRLNRMYPKSIV
KPALDTILVPRPQTAVVGGKPIAGIALLQWAHGVIDAIIDPPATS
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctcaccggcctcgccgacgtcgtcctcgccgaccccaccctcgccgccgccgtc
gaggacgcccgcgggggcgcggtccgcgcgctcgacctcaccgggcccgaggcgctgcgc
ccgttcgtggtcaccggcctggtccgcgccggccgcaccgtgctggccgtcaccgccacc
gcgcgggaggccgaggacctggtcgaggcgctcggctgcttcctcgaccccggcacggtc
gcctactaccccagctgggagacgctcccgcacgagcggctcagcccccgcagcgacacc
gtgggtcgccggctcgcggtgctgcgccggctcgtgcaccccggcgacgacgccagcaac
ggcccgctccaggtcgtcgtggcgccggtgcgcagcgtgctccagccccaggtgaagggg
ctcggcgagctcgcccccgtcgagctggttccgggcgacgacgccccgctcgacgacgtg
gtgcggcggctggcggacgcggcgtactcccgcgtggacctggtggagcggcgcggggag
ttcgcggtccgcggcggcatcgtcgacgtcttcccgccgaccgaggagcacccgctgcgc
gtggagttctggggcgacgaggtcgaggagatccgcgccttctccgtcgccgaccagcgc
accctggacaaggtcgagcggctctgggcgccgccgtgccgcgagctgctgctcaccgac
gaggtgcgcgagcgcgccgccgagctgggccgccggcacccgaccctggtcgagctcacc
gacaagatcgccgccggcatcgcggtcgagggcatggagtccctcgcacccgtgctcacc
gacgagatggagctgctggtcgacctgatgccggccgacacccacgtgctggtcctcgac
cccgagcgggcgcggagccgggcccacgacctggtcgcgacgagcgaggagttcctcggg
gcgagctgggcggcggccgccagcggcgggaccgcgccgatcgacctcggcgcggcgtcg
taccgctcgctctccgacgtccgcgagcacgccctggaccagcacaagccgtggtggacg
atgagccccttcggcatcggcgacgacgcctccgggccggtgaccgacgtcgacgcgatc
gccggcgcggtgccgagccgggcgctgccgatgcacccggtcgacgcctaccgcggtgac
ctggagcgcgcggtcaaggacatcggcacctggctcgccgagggctaccgcaccgtggtc
gtccaccccggccacggcccagcgaaccggatggtcgaggtgctcgccgagcacgacgtc
cccgcgcgcctggtcgaggacctcagcggcccgccggccaccgacgtcgtcaccgtcacc
tgcgcctcggccgcgcacggcttcgtcgacgagctgggccgcacggtgctgctcaccggc
gaggacctcaccggccagaagtcctccacgcgcgacatgcggaagatgcccgcgcggcgc
aagaagcagatcgacccgctcgagctcaaggccggcgactacgtcgtccacgagcagcac
ggcgtgggccggttcgtggagatgaagcagcgcgaggtcggcggcgcggtccgcgagtac
ctcgtgctcgagtacggcgcctccaagcgcggcggtccgcccgaccggctctacgtgccg
gccgacgcgctggaccaggtcacccgctacgtcggcggcgagcagcccagcctggaccgc
ctcggcggcgcggactgggccaagcgcaaggggcgcgcccgcaaggccgtccgcgagatc
gccgccgagctgatcaagctctacgccgcgcggcaggccacccagggctacgccttcggc
ccggacaccccgtggcagcgcgagctcgaggacgccttcccgttccaggagacccccgac
cagctgagcacggtcgacgaggtcaaggccgacatgcggcgcacgatgccgatggaccgg
ctcatctgcggcgacgtcggctacggcaagaccgagatcgcggtgcgcgcggcgttcaag
gccgtccaggacggcaagcaggtcgccgtgctcgtgccgaccacgctgctggtcacccag
cacctctcgaccttcgccgagcggatggccggcttcccggtcgtgctcaaggcgctctcg
cgcttccagagcgacaaggaggccgccgaggtgatggcggggatcgccgagggcagcatc
gacatcgtcgtgggcacccaccggctgctcaaccccgacatccggttcaaggacctcggg
ctgatcgtcgtcgacgaggagcagcgcttcggtgtggagcacaaggagcagatgaagcgg
ctgcgcacctccgtcgacgtgctctccatgtcggccacgccgatcccgcgcaccctggag
atggcgatcaccggcatccgcgagatgtcgacgatcaccaccccgcccgaggagcggcac
ccggtgctgacctacgtcggcgcctacgaggaccgccaggtcgtcgccgccgtacgccgc
gagctgctgcgcgagggccaggtcttctacatccacaaccgggtcaactcgatcgagaag
gcggccgcgaggatccgcgagctcgtgcccgaggcgcgggtcgcgaccgcgcacggccag
atgaacgagaagcagctcgagcaggtgatgctcgacttctgggagaagcgcttcgacgtg
ctggtctgcacgacgctggtggagtccggtctcgacgtctccaacgccaacacgatgatc
atcgagcgcgccgacaccctcggcctctcccagctccaccagctgcgcggccgggtcggc
cggtcccgggagcgcgcctacgcctacttcctctacccgggggagaagccgctgaccgag
accgcccacgcgcggctcgcgacgctggcacagcactccgacctcggcggcggcatggcg
atcgcgatgaaggacctcgagatccgcggcgcgggcaacctgctcggcggggagcagtcg
ggccacatcgccgacgtcggcttcgacctctacgtccgcctggtcggcgaggccgtcacc
gagttcaagggcgagacggagccggagctcaacgaggtccgcatcgagctgccggtcgac
gcgcacctgccgcacgactacatccccagcgagcggctgcggctggaggtctacaagcgg
ctcgccgaggtccgcagcgacgccgacgtcgaccagatccgcgaggagctcgtcgaccgg
tacggcgagccgccggaggtcgtcacctcgctgctgctggtcgcgcggttccgcgcgcgg
gcgcgcacggccggcatcggggaggtcacggccgcgggcaagaacatccgcttcgccccg
gtgagcctgccggagtcgcgggtggtccggctcaaccggatgtacccgaagtcgatcgtg
aagccggccctcgacacgatcctggtgccgcgcccgcagaccgcggtggtggggggcaag
ccgatcgccggcatcgccctgcttcaatgggcccacggtgtgatcgacgccatcatcgac
ccgccggccaccagctga
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