Nocardioides marmotae: HPC71_06530
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Entry
HPC71_06530 CDS
T09088
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nmar
Nocardioides marmotae
Pathway
nmar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nmar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPC71_06530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nmar03019
]
HPC71_06530
03009 Ribosome biogenesis [BR:
nmar03009
]
HPC71_06530
Enzymes [BR:
nmar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HPC71_06530
Messenger RNA biogenesis [BR:
nmar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPC71_06530
Ribosome biogenesis [BR:
nmar03009
]
Prokaryotic type
rRNA processing factors
HPC71_06530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QKE00769
LinkDB
All DBs
Position
1354436..1358098
Genome browser
AA seq
1220 aa
AA seq
DB search
MADDDLQVAPTETTGATTGPASEDTPPAKKTAARKTAAKKTAAAKTATTKKAAAKKAPAK
RTTKKAAAVADAELPIADAAPVEAPVEVPAESPVAVAGEEPAPAKKAAAKRTTKKAAAKK
APAKRASAKKAAAAPEVDPTVEAAASPAEDAGAGEATVEATRPAAVPLFQAPEPVKAPAR
RSRKRAVPAPEPEPVEEPLAEDDELTEAAPGEPTVEPPAAEEAAEAADEQADDQDGEDAD
EQDGEDDTDQDDTDQDGEGGGNGRRRRRRGGRRRRKSGGGDSAESDQGSGDQGSGNQGSG
NQRSGAKDSTAAGEGQAGEKPGEASEEASDQEQDKDRSEGESGEGSSSRRRRRRRRSGEG
GDSGDSGEDSEKTVTRVRQSRTGEDQITAVSGSTRLEAKKQRRREGREAGRRRAPIVSEA
EFLARREAVDRVMVVRQRDELTQIGVLEDKVLVEHYVARESQTSLIGNVYLGRVQNVLPS
MEAAFIDIGKGRNAVLYAGEVNWSALGHREGQPRKIESVLSSGQSVLVQVTKDPIGNKGA
RLTSQVSLAGRFLVYVPDGTTSGISRKLPDTERSRLKALLKDIVPDSAGVIVRTAAEGAS
EDELTRDVERLKARWEDIEKKAKGSAPQLLYGEPDLTLKVVRDLFTEDFSKLVIEGSDAW
DTVQGYVQHVAPDLAERLERYEPSEHDGKDVFASYRIEEQIAKALDRKVWLPSGGSLVID
RTEAMTVIDVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVVDFIDMVLE
SNRDLVLRRLVECLGRDRTRHQVAEVTSLGLIQMTRKRIGTGLVESFSENCEHCQGRGVV
IHDAPVEPRRSEDEGRGRGGSGSGGGGRRRGGKGRDDDQPPQSQQQSGRDGGSSDKPGAP
KVPSPAELAAMARPDEKAEAADDTAAEAPVEAPAAVESEVQPEAAAEPAPPRVTTRSRRR
GGSRSADPAPVAEPVVEPAAPVEPAAEPAAEAPAEAPAAAESEVQPEPVAEPAPPRVTTR
TRGRRGSRAADPAPVAEPVVEAVVEATAPVEQAVEPVAEPVAEPVAEPAVEAPVEPAAPP
RVVTRTRRRAASRPAGQPDTVSEPVSISEPATPEAPATAEAVEPVTTSQAPEAAQAAEPA
EAPATTPVVTPPAPKVVTRTRGRSATRPAGPPAGVTASSTNSTDGTTAGSDGQDGPADSE
GEDESSVEHVPVKKKGPRKR
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgacgacctgcaggtcgcccccaccgagaccacgggggccaccaccggcccc
gcctcggaggacacgccgccggcgaagaagaccgccgcgcgcaagaccgccgccaagaag
acggccgccgcgaagaccgcgacgaccaagaaggcagcggccaagaaggcccccgccaag
cggaccaccaagaaggccgccgccgtggccgacgccgagctcccgatcgcggacgccgcc
ccggtcgaggcgcccgtcgaggtgccggccgagagtccggtcgccgtcgcgggcgaggag
cccgccccggcgaagaaggctgccgcgaagcggaccacgaagaaggccgccgccaagaag
gccccggccaagcgggcgagcgcgaagaaggccgccgcggctcccgaggtcgacccgacg
gtcgaggccgcggcttcccccgccgaggacgccggagcgggcgaggccacggtcgaggcg
acccgcccggccgccgtaccgctgttccaggcccccgagccggtcaaggcgcctgcgcgc
cgcagccgcaagcgcgccgtcccggctcccgagccggagccggtcgaggagccgctggcc
gaggacgacgagctgaccgaggccgccccgggcgagccgaccgtcgagccgccggccgcc
gaggaggctgctgaggcggccgacgagcaggccgacgaccaggacggcgaggacgccgac
gagcaggacggcgaggacgacaccgaccaggacgacaccgaccaggacggcgagggcggc
ggcaacggccgtcgtcgtcgccgccggggcggtcgccgccgccgcaagtccggtggcggg
gactccgccgagtccgaccagggctccggcgaccagggctcgggcaaccagggctcgggc
aaccagcgctccggcgccaaggacagcaccgccgcgggcgagggccaggccggcgagaag
cccggcgaggcctccgaggaggcgtcggaccaggagcaggacaaggaccgcagcgagggg
gagtccggcgagggctcgtcctcccggcgccgccgccggcgccgccgctccggtgagggc
ggggacagcggcgacagcggggaggactcggagaagaccgtcacccgcgtccggcagagc
cgcaccggcgaggaccagatcaccgccgtctccggctcgacccgcctggaggccaagaag
cagcgccgccgcgagggccgcgaggccggccgccggcgcgcgccgatcgtgagcgaggcc
gagttcctggcccgtcgcgaggcggtcgaccgggtcatggtggtccgccagcgcgacgag
ctgacccagatcggcgtcctcgaggacaaggtgctcgtggagcactacgtcgcccgcgag
tcgcagacctcgctgatcggcaacgtctacctcggtcgcgtccagaacgtgctgccctcc
atggaggcggcgttcatcgacatcggcaagggccgcaatgccgtgctgtacgccggtgag
gtcaactggtccgcgctgggtcaccgcgagggccagccccgcaagatcgagtcggtcctc
tcctcgggccagtcggtgctcgtgcaggtcaccaaggacccgatcggcaacaagggcgcc
cggctcaccagccaggtcagcctcgccggccgcttcctggtctacgtgcccgacggcacc
accagcggcatctcccgcaagctccccgacaccgagcgcagccgcctcaaggcgctgctc
aaggacatcgtccccgactccgccggcgtgatcgtgcgcaccgcggccgagggggccagc
gaggacgagctgacccgcgacgtcgagcggctcaaggcccgctgggaggacatcgagaag
aaggccaagggcagcgccccgcagctgctgtacggcgagccggacctcaccctcaaggtg
gtccgcgacctgttcaccgaggacttctccaagctcgtcatcgagggctcggacgcctgg
gacaccgtccagggctacgtccagcacgtcgcgcccgacctcgccgagcgcctcgagcgc
tacgagccgtccgagcacgacggcaaggacgtcttcgcgtcgtaccggatcgaggagcag
atcgccaaggcgctggaccgcaaggtctggctgccctcgggcgggtcgctggtcatcgac
cgcaccgaggcgatgacggtcatcgacgtcaacaccggcaagttcaccggctccgggggc
aacctggaggagacggtcaccaagaacaacctggaggcggccgaggaggtcgtgcgccag
ctccggctgcgcgacatcggcggcatcatcgtcgtcgacttcatcgacatggtcctggag
tccaaccgcgacctcgtgctccgccggctggtggagtgcctgggccgcgaccggacccgg
caccaggtcgccgaggtcacctcgctcgggctgatccagatgacccgcaagcggatcggc
accggcctggtcgagtccttcagcgagaactgcgagcactgccagggccgcggcgtggtc
atccacgatgccccggtcgagccgcgcaggagcgaggacgagggccgcggccgcggtggc
agtggcagtggcggcggtggccgtcgccggggcggcaagggtcgcgacgacgaccagccg
ccgcagtcccagcagcagtccggtcgcgacggcggatcctcggacaagccgggcgccccc
aaggtgcccagcccggccgagctggccgcgatggcccgccccgacgagaaggccgaggct
gcggacgacaccgctgccgaggcgcccgtcgaggctcccgctgccgtggagtcggaggtc
cagcccgaggccgccgcggagccggcgccgccgcgggtcaccacccgcagccgtcgccgt
ggtggcagccgctcggccgacccggcgcccgtcgccgagccggtcgtcgagccggccgcg
cccgtggagcccgccgctgagcccgccgctgaggcccccgccgaggcacccgctgccgcg
gagtcggaggtccagcccgagcccgtcgccgagccggcgccgccgcgggtcaccacccgc
acccgcggccgccgcgggagccgcgcggctgacccggcgcccgtcgccgagccggtcgtc
gaggcggtcgtcgaggcgaccgcgcccgtcgagcaggccgtcgagccggtcgcggagccg
gtggccgagccggtggccgagcctgcggtggaggcgccggtcgagccggccgcgccgccg
cgggtggtcacccgcacccggcgccgggcggcgagccgtccggccggtcagccggacacg
gtgagcgagccggtctcgatcagcgagcccgcgacccccgaggccccggcgaccgccgag
gccgtggagccggtcaccacctcgcaggctcccgaggccgcccaggcggctgagcccgcc
gaggcgcccgcgacgacccccgtggtcacgcctccggcgcccaaggtggtcacccgcacg
cggggccgcagcgcgacccgtccggcgggtccgcccgccggagtgacggcgagcagcacc
aacagcacggacggcaccacggccggcagtgacggccaggacggcccggcggacagcgag
ggcgaggacgagtcctcggtcgagcacgtgccggtgaagaagaagggcccccgcaagcgc
tga
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